Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865354:139865368:[+] chr2:241683393:241683414:[-] nonBSJ supported CDS

circRNA 5':CCUGU--------GUCAAGGUCU 3'


            |||: |:|||:| |


target  3':CGACGACCAUCACCGGUUUCUG 5'

 -9.60 29 RIC-seq
chrX:139865379:139865410:[+] chr2:241683381:241683411:[-] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGCGACUUCAAGUCUUCCAAU 3'


            |||| || || ||| ||||


target  3':CGCCCUUGCCCACGACGACCAUCACC-GGUUU 5'

 -13.40 23 RIC-seq
chrX:139866204:139866238:[+] chr2:241683387:241683425:[-] nonBSJ supported CDS

circRNA 5':CCGGGU-CUUCCAGGAAAU--CCGU-GUCUUCC--AGCAAG 3'


            ||||| || || ||: | |:|| |:|||


target  3':UGCCCACGACGA-CCAUCACCGGUUUCUGGAGCUUUUGUU 5'

 -16.60 1 RIC-seq
chrX:139866204:139866238:[+] chr2:241683387:241683426:[-] nonBSJ supported CDS

circRNA 5':CCGGGU-CUUCCAGGAAAU--CCGU-GUCUUCC--AGCAAG 3'


            ||||| || || ||: | |:|| |:|||


target  3':UGCCCACGACGA-CCAUCACCGGUUUCUGGAGCUUUUGUUA 5'

 -16.60 10 RIC-seq
chrX:139866204:139866245:[+] chr2:241683387:241683419:[-] nonBSJ supported CDS

circRNA 5':CCGGGU-CUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGU 3'


            ||||| || || ||| ||| ||| || ||


target  3':UGCCCACGACGA-CCAU----CACC---GGU--UUCUGGAGCU 5'

 -15.20 1 RIC-seq
chrX:139866226:139866236:[+] chr2:241679495:241679505:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCA 3'


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target  3':AGGAAGGUCGC 5'

 -15.50 1 RIC-seq
chrX:139866311:139866328:[+] chr2:241683406:241683423:[-] nonBSJ supported CDS

circRNA 5':UCCAUAG-CUUCCGAAAAA 3'


            ||| || |:| ||||||


target  3':CGGUUUCUGGA-GCUUUUG 5'

 -11.10 10 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:241679495:241679505:[-] target 3057050 chr2:241679501-241679502 C>T KIF1A-related_disorder ClinVar
chrX:139866311:139866328:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC