Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865640:139865666:[+] chr2:241702189:241702217:[-] nonBSJ supported CDS

circRNA 5':UUCCAUCAAAUA---CAGAUCUUCCAGCUA 3'


            |||||| |||| |:|||||||


target  3': AGGUAGACGAAGACGUCUCGGAGGUCGAA 5'

 -26.30 2 RIC-seq
chrX:139865776:139865818:[+] chr2:241696769:241696811:[-] nonBSJ supported CDS

circRNA 5':AGAAAUCCAGGUCUU--CCAGUCAAUCAGUGUC--UUCCAGAAAGAA 3'


            ||||: ||||:: || ||| |||:|: :||| ||||||


target  3':AUUUUGC--CCAGGGCCGG-CAGCGUGUCGCGCACGAGGCCUUUCU 5'

 -31.90 1 RIC-seq
chrX:139865815:139865854:[+] chr2:241696769:241696808:[-] nonBSJ supported CDS

circRNA 5':AGAAAUCCAGGUCUU--CCAGUCAGU-CAGUGUC--UUCCAGAAA 3'


            ||||: ||||:: || ||| |: |||:|: :||| |||


target  3':AUUUUGC--CCAGGGCCGG-CAG-CGUGUCGCGCACGAGGCCUU 5'

 -26.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:241696769:241696808:[-] target - chr2:241696801-241696802 C>A BTCA-JP ICGC
chr2:241696769:241696811:[-] target - chr2:241696801-241696802 C>A BTCA-JP ICGC