Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865552:139865582:[+] chr13:115007609:115007641:[+] nonBSJ supported CDS

circRNA 5': AGCAAUUACUGGUCUUCCACCAAAUC---CAGAU 3'


            ||| ||:| |:| |||| | ||||


target  3':CUCG-UAGUAUCUAAAAGGGCGCAUCUUCUGUCU 5'

 -12.10 11 RIC-seq
chrX:139865552:139865583:[+] chr13:115007607:115007641:[+] nonBSJ supported CDS

circRNA 5': AGCAAUUACUGGUCUUCCACCAAAUC---CAGAUC 3'


            ||| ||:| |:| |||| | |||||


target  3':CUCG-UAGUAUCUAAAAGGGCGCAUCUUCUGUCUAU 5'

 -13.10 1 RIC-seq
chrX:139865552:139865583:[+] chr13:115007611:115007641:[+] nonBSJ supported CDS

circRNA 5': AGCAAUUACUGGUCUUCCACCAAAUCCAGAUC 3'


            ||| ||:| |:| |||| | |||:


target  3':CUCG-UAGUAUCUAAAAGGGCGCAUCU-UCUGU 5'

 -12.00 2 RIC-seq
chrX:139865642:139865664:[+] chr13:115007620:115007639:[+] nonBSJ supported CDS

circRNA 5':CCAUCAAAUACAGAUCUUCCAGC 3'


            ||||| |||| |||| ||


target  3':CGUAGUA----UCUAAAAGGGCGC 5'

 -12.00 12 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:115007607:115007641:[+] target - chr13:115007638-115007639 G>T LICA-CN ICGC
chr13:115007609:115007641:[+] target - chr13:115007638-115007639 G>T LICA-CN ICGC
chr13:115007611:115007641:[+] target - chr13:115007638-115007639 G>T LICA-CN ICGC
chr13:115007620:115007639:[+] target - chr13:115007638-115007639 G>T LICA-CN ICGC