Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866368:139866393:[+] chr17:4927597:4927625:[+] nonBSJ supported 3UTR

circRNA 5':ACGUCUUCCAA--CAAAGCCA-UGUCUUC 3'


            | |||||| | |||| :| ||:


target  3':GGGAGAAGGAAAGGAGUCGGAGGCCGAGC 5'

 -18.20 52 RIC-seq
chrX:139866368:139866395:[+] chr17:4927602:4927625:[+] nonBSJ supported 3UTR

circRNA 5':ACGUCUUCCAA--CAAAGCCAUGUCUUCCA 3'


            | |||||| | |||| |||


target  3':GGGAGAAGGAAAGGAGUCGG------AGGC 5'

 -18.00 1 RIC-seq
chrX:139866255:139866278:[+] chr17:4910556:4910579:[+] nonBSJ supported CDS

circRNA 5':AAGCCAU-GUCUUCCAGACUAUCCA 3'


            ||| :||||| |||


target  3':GUCGAUAUUAGAAGAGACAG-AGGA 5'

 -12.50 1 RIC-seq
chrX:139866267:139866304:[+] chr17:4910556:4910580:[+] nonBSJ supported CDS

circRNA 5':CCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCC 3'


            ||| |||| :||||| :|||||:|


target  3':AGUC-GAUAU---UAGAAGA---------GACAGAGGA 5'

 -16.60 30 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:4910556:4910579:[+] target 450099 chr17:4910568-4910569 A>G Hereditary_spastic_paraplegia|not_provided|Spastic_ataxia_2 ClinVar
chr17:4910556:4910580:[+] target 450099 chr17:4910568-4910569 A>G Hereditary_spastic_paraplegia|not_provided|Spastic_ataxia_2 ClinVar