Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865544:139865580:[+] chr15:28519439:28519485:[-] nonBSJ supported CDS

circRNA 5':AGUCUU------CCAGCAAUUACUGGUC-----UUCCACCAAAUCCAG 3'


            ||| || |||||| :||||||| ||||


target  3':GCAGUGCUGCCUGGACUCCUUGGACCAGCGAGAGAGGUGGUGGAGGU 5'

 -29.60 1 RIC-seq
chrX:139865544:139865584:[+] chr15:28519439:28519489:[-] nonBSJ supported CDS

circRNA 5':AGUCUU------CCAGCAAUUACUGGUC-----UUCCACCAAAUCCAGAUCU 3'


            ||| || |||||| :||||||| ||||| :|


target  3':GCAGUGCUGCCUGGACUCCUUGGACCAGCGAGAGAGGUGGUGGAGGUC-GGU 5'

 -32.80 1 RIC-seq
chrX:139865544:139865589:[+] chr15:28519439:28519490:[-] nonBSJ supported CDS

circRNA 5':AGUCUU------CCAGCAAUUACUGGUC-----UUCCACCAAAUCCAGAUCUUCCAG 3'


            ||| || |||||| :||||||| ||||| |||


target  3':GCAGUGCUGCCUGGACUCCUUGGACCAGCGAGAGAGGUGGUGGAGGUC-----GGUG 5'

 -33.10 5 RIC-seq