Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865670:139865692:[+] chr2:175673738:175673759:[-] nonBSJ supported CDS

circRNA 5': CAUGUCUUC-CAGAAAAAUCUGUG 3'


            ||||| || |||||| |||||:


target  3':UGUACA--AGUGUCUUUAUAGACG 5'

 -19.00 1 RIC-seq
chrX:139865670:139865697:[+] chr2:175673738:175673765:[-] nonBSJ supported CDS

circRNA 5': CAUGUCUUC-CAGAAAAAUCUGUG-UCUUC 3'


            ||||| || |||||| |||||: |||:


target  3':UGUACA--AGUGUCUUUAUAGACGGAAGAG 5'

 -21.60 1 RIC-seq
chrX:139865670:139865702:[+] chr2:175673738:175673768:[-] nonBSJ supported CDS

circRNA 5': CAUGUCUUC-CAGAAAAAUCUGUGUCUUC-CACCA 3'


            ||||| || |||||| |||||: |||| ||||


target  3':UGUACA--AGUGUCUUUAUAGACG--GAAGAGUGG 5'

 -29.70 1 RIC-seq
chrX:139865670:139865703:[+] chr2:175673738:175673769:[-] nonBSJ supported CDS

circRNA 5': CAUGUCUUC-CAGAAAAAUCUGUGUCUUC-CACCAA 3'


            ||||| || |||||| |||||: |||| |||||


target  3':UGUACA--AGUGUCUUUAUAGACG--GAAGAGUGGU 5'

 -30.40 28 RIC-seq
chrX:139866117:139866158:[+] chr2:175742794:175742859:[-] nonBSJ supported CDS

circRNA 5':AUCU-UCCAAU----------------------GGCCUCCAGG-UCUUCCA-GACUAUCCAUGUCUU 3'


            ||| :||||: :|||| || ||| |||| |||| :|||


target  3':AAGAGGGGUUGUUUCACGAACGGUAGCAUCAUCUCGGACUUCAAAGACCAAACUGA-AGGUUUAGAC 5'

 -25.70 4 RIC-seq