Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866623:139866664:[+] chr7:92146672:92146704:[-] nonBSJ supported 5UTR

circRNA 5':UCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCC 3'


            ||| ||||: |||| |||| ||||| |||||


target  3':UGAACAUCGUGU--GUCCGGAAGA--GUAGA-----AGAAGU 5'

 -27.00 13 RIC-seq
chrX:139866658:139866710:[+] chr7:92146650:92146701:[-] nonBSJ supported 5UTR

circRNA 5':GUCUUCCAA--CAUCUCCACGU--CUUCCAGCAUCUCUGUGUCUUCCAGCAUCUUCA 3'


            ||||| ||| |||| ||| ||||: | | |:|||| |||||||


target  3':AAGAAGUUCAGGUA-AGGUCUGAUGAACAUCGUGU-GUC-CGGAAGA--GUAGAAGA 5'

 -31.70 1 RIC-seq
chrX:139866658:139866712:[+] chr7:92146650:92146706:[-] nonBSJ supported 5UTR

circRNA 5':GUCUUCCAA--CAUCUCCACGU--CUUCCAGCAUCUCUGUGUCUUC-CAGCAUCUUCAUG 3'


            ||||| ||| |||| ||| ||||: | | |:|||| || | |||||||


target  3':AAGAAGUUCAGGUA-AGGUCUGAUGAACAUCGUGU-GUC-CGGAAGAGUAGAAGAAGUAA 5'

 -32.30 16 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:92146650:92146701:[-] target 1726409 chr7:92146655-92146656 C>A Peroxisome_biogenesis_disorder_1B|Peroxisome_biogenesis_disorder_1A_(Zellweger) ClinVar
chr7:92146650:92146701:[-] target 863102 chr7:92146658-92146659 GTCCATTCCAGACTACTTGTAGCACACAGGCCTTCTCATCTTCTTCATTATGATCTGACCTAATTTTTTTTTGATCTAGTGGCTCTGACATCTGCTTCTCTTTTTCAGGTGATAACACATTTTGTTTTGTTTTACTTTGCTGTTGCTTTGGAGAAAGTAGCTTAACTAGCTTTCCATATGTCACAGTAAAGCTGGGCTCTACATCAAAATATTCCTGGTCCCATGGAAATACATGAATGGCACAGTGTTTATGAAAAACAGAGGTTGCTGACGCGTTATATATACTAGGAGGTTGAGATTTGCATACTCTGAAAATATTGTCTAGAGGAACAACCTTTGACTGCATATTTTTGAATGCATTGATTTCAGTTAAACCCCAAGATGTCTCTTGTTTCTTCTCAGATTGAAAGGAAAAAATGCTTCCTATCATAGTCCATAAACTTGCTACTGATGATGAGTCAACTGGAATCTCTGACTCGTTTTCATTAGATTCAGTGATTCCCACAGTATTTGACTGAAGTTGCTTGGTTTGAAGTTCTTTCATCATTCCTTTCTGGTCTCTTCCATAACTATGAAGTTTTTTATATTCAGCATCAGCTTTTGAAAATGTATTCTCTTTGGCTCGGCGTGTCTTTGGCTGAATAAGGAGTTTGGTGTCAGTTTCCAGCCTTCCATAAGAGGCAGCTGGTATTAGTGCAACTGTGTAGAAAATAAAGCTCATTAGTGCACATTCATTTCTACTTTGGACTCAATGCTATAGTGTAGAATATGACAGCAAATATTACAATAGCACCTACCAATTTGGATAAATATGTACGTTTGTTGATCAACCCAAACAGGAAAAATGGCTTTTGGAAAAACTATTCGAATTTGATCTAGAAGATGTTGTTCAAGGGAAACAGCATGCAGCTCCTAGAACCAACAGACGAAAAGATCAATTCACTTTACATTTTGTCCACTCCATATCTAGTTAAAAAAAATCTCAATTCTTTTTTTAAAAAACAAATTTTAATGTGCATATTTAATATACACGACATGGTGTTATGAGCTACATATAGATAGTATAATGGTTACTATAGTGAAGTAAATTAACATATACATCATCTCACAGTTACCCACTTTTGTGTTTTTGTGGTAAGAGTAGTTAAAATCTACTCATTTAACATGAATCCCCAATACAATTTTATTACCTATAGTTGTCAGGTTGTACATTAGATCTCTATCAATTCATTCTTTTTTTATTTGAGACAAGGTCTCACTCTGTTTTCCAGACTGGAGTACAATGGCAAGATCCTGACTCACTGCAGCCTTGACTTTACGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTGACTGGGACTAATGGCATGCACTACCATGCCTGGCTAATTTTTGTATTTTTAGTAGATACGGGGTTTCACCATGTTGCCCAGCCTGGTCTTGAAC>G Peroxisome_biogenesis_disorder_1A_(Zellweger) ClinVar
chr7:92146650:92146701:[-] target 2752831 chr7:92146665-92146666 C>T Zellweger_spectrum_disorders ClinVar
chr7:92146650:92146701:[-] target 639480 chr7:92146666-92146667 C>T Zellweger_spectrum_disorders ClinVar
chr7:92146650:92146701:[-] target 371767 chr7:92146673-92146674 CT>C Peroxisome_biogenesis_disorder_1B|Peroxisome_biogenesis_disorder_1A_(Zellweger) ClinVar
chr7:92146650:92146701:[-] target 3344705 chr7:92146688-92146689 CCTTCT>C PEX1-related_disorder ClinVar
chr7:92146650:92146701:[-] target 286796 chr7:92146697-92146698 CT>C Zellweger_spectrum_disorders|Peroxisome_biogenesis_disorder_1B|not_provided ClinVar
chr7:92146650:92146706:[-] target 1726409 chr7:92146655-92146656 C>A Peroxisome_biogenesis_disorder_1B|Peroxisome_biogenesis_disorder_1A_(Zellweger) ClinVar
chr7:92146650:92146706:[-] target 863102 chr7:92146658-92146659 GTCCATTCCAGACTACTTGTAGCACACAGGCCTTCTCATCTTCTTCATTATGATCTGACCTAATTTTTTTTTGATCTAGTGGCTCTGACATCTGCTTCTCTTTTTCAGGTGATAACACATTTTGTTTTGTTTTACTTTGCTGTTGCTTTGGAGAAAGTAGCTTAACTAGCTTTCCATATGTCACAGTAAAGCTGGGCTCTACATCAAAATATTCCTGGTCCCATGGAAATACATGAATGGCACAGTGTTTATGAAAAACAGAGGTTGCTGACGCGTTATATATACTAGGAGGTTGAGATTTGCATACTCTGAAAATATTGTCTAGAGGAACAACCTTTGACTGCATATTTTTGAATGCATTGATTTCAGTTAAACCCCAAGATGTCTCTTGTTTCTTCTCAGATTGAAAGGAAAAAATGCTTCCTATCATAGTCCATAAACTTGCTACTGATGATGAGTCAACTGGAATCTCTGACTCGTTTTCATTAGATTCAGTGATTCCCACAGTATTTGACTGAAGTTGCTTGGTTTGAAGTTCTTTCATCATTCCTTTCTGGTCTCTTCCATAACTATGAAGTTTTTTATATTCAGCATCAGCTTTTGAAAATGTATTCTCTTTGGCTCGGCGTGTCTTTGGCTGAATAAGGAGTTTGGTGTCAGTTTCCAGCCTTCCATAAGAGGCAGCTGGTATTAGTGCAACTGTGTAGAAAATAAAGCTCATTAGTGCACATTCATTTCTACTTTGGACTCAATGCTATAGTGTAGAATATGACAGCAAATATTACAATAGCACCTACCAATTTGGATAAATATGTACGTTTGTTGATCAACCCAAACAGGAAAAATGGCTTTTGGAAAAACTATTCGAATTTGATCTAGAAGATGTTGTTCAAGGGAAACAGCATGCAGCTCCTAGAACCAACAGACGAAAAGATCAATTCACTTTACATTTTGTCCACTCCATATCTAGTTAAAAAAAATCTCAATTCTTTTTTTAAAAAACAAATTTTAATGTGCATATTTAATATACACGACATGGTGTTATGAGCTACATATAGATAGTATAATGGTTACTATAGTGAAGTAAATTAACATATACATCATCTCACAGTTACCCACTTTTGTGTTTTTGTGGTAAGAGTAGTTAAAATCTACTCATTTAACATGAATCCCCAATACAATTTTATTACCTATAGTTGTCAGGTTGTACATTAGATCTCTATCAATTCATTCTTTTTTTATTTGAGACAAGGTCTCACTCTGTTTTCCAGACTGGAGTACAATGGCAAGATCCTGACTCACTGCAGCCTTGACTTTACGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTGACTGGGACTAATGGCATGCACTACCATGCCTGGCTAATTTTTGTATTTTTAGTAGATACGGGGTTTCACCATGTTGCCCAGCCTGGTCTTGAAC>G Peroxisome_biogenesis_disorder_1A_(Zellweger) ClinVar
chr7:92146650:92146706:[-] target 2752831 chr7:92146665-92146666 C>T Zellweger_spectrum_disorders ClinVar
chr7:92146650:92146706:[-] target 639480 chr7:92146666-92146667 C>T Zellweger_spectrum_disorders ClinVar
chr7:92146650:92146706:[-] target 371767 chr7:92146673-92146674 CT>C Peroxisome_biogenesis_disorder_1B|Peroxisome_biogenesis_disorder_1A_(Zellweger) ClinVar
chr7:92146650:92146706:[-] target 3344705 chr7:92146688-92146689 CCTTCT>C PEX1-related_disorder ClinVar
chr7:92146650:92146706:[-] target 286796 chr7:92146697-92146698 CT>C Zellweger_spectrum_disorders|Peroxisome_biogenesis_disorder_1B|not_provided ClinVar
chr7:92146650:92146706:[-] target 813450 chr7:92146702-92146703 TC>T Peroxisome_biogenesis_disorder|Zellweger_spectrum_disorders|Heimler_syndrome_1|Peroxisome_biogenesis_disorder_1A_(Zellweger)|Peroxisome_biogenesis_disorder_1B ClinVar
chr7:92146672:92146704:[-] target 371767 chr7:92146673-92146674 CT>C Peroxisome_biogenesis_disorder_1B|Peroxisome_biogenesis_disorder_1A_(Zellweger) ClinVar
chr7:92146672:92146704:[-] target 3344705 chr7:92146688-92146689 CCTTCT>C PEX1-related_disorder ClinVar
chr7:92146672:92146704:[-] target 286796 chr7:92146697-92146698 CT>C Zellweger_spectrum_disorders|Peroxisome_biogenesis_disorder_1B|not_provided ClinVar
chr7:92146672:92146704:[-] target 813450 chr7:92146702-92146703 TC>T Peroxisome_biogenesis_disorder|Zellweger_spectrum_disorders|Heimler_syndrome_1|Peroxisome_biogenesis_disorder_1A_(Zellweger)|Peroxisome_biogenesis_disorder_1B ClinVar