Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865634:139865639:[+] chr7:91739729:91739735:[+] nonBSJ supported 3UTR

circRNA 5': AAGGUC 3'


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target  3':GUUCCAA 5'

 -4.80 1 RIC-seq
chrX:139865837:139865852:[+] chr7:91724448:91724463:[+] nonBSJ supported CDS

circRNA 5':GUCAGUGUCUUCCAGA 3'


            ||| ||: |:|||:


target  3':AAGUGACGCAGGGUUG 5'

 -13.20 1 RIC-seq
chrX:139866241:139866247:[+] chr7:91652127:91652132:[+] nonBSJ supported CDS

circRNA 5':CACGUCU 3'


            ||:||


target  3':CUGUAG 5'

 -4.60 2 RIC-seq
chrX:139866521:139866540:[+] chr7:91722617:91722633:[+] nonBSJ supported CDS

circRNA 5':AACC---AAGCCAUGUCUUCCAG 3'


            ||| ||||| ||||


target  3':GUGGACUUUCGG------AGGUU 5'

 -11.40 1 RIC-seq
chrX:139866598:139866635:[+] chr7:91729128:91729160:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUCU 3'


            || ||: |: ||| |||| | ||||||||| ||


target  3':CAGCUAU-GGUGGAC-UAGA---CGAGAAGGUCGAAGU 5'

 -25.50 2 RIC-seq
chrX:139866713:139866739:[+] chr7:91632013:91632042:[+] nonBSJ supported CDS

circRNA 5': UCUUC--CAACAACU--ACCCAGUCUUCCAU 3'


            ||:| |||||||: ||||| |||||


target  3':UAGGAAAAGUUGUUGGAGUGGGUA--AAGGUU 5'

 -23.00 1 RIC-seq
chrX:139866713:139866748:[+] chr7:91632002:91632042:[+] nonBSJ supported CDS

circRNA 5': UCUUC--CAACAACU--ACCCAGUCUUCCAUCAACUG-GCU 3'


            ||:| |||||||: ||||| ||||| |||


target  3':UAGGAAAAGUUGUUGGAGUGGGUA--AAGGUUACAAAGACGAU 5'

 -25.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:91729128:91729160:[+] target 561262 chr7:91729152-91729153 G>A Long_QT_syndrome|Cardiovascular_phenotype ClinVar