Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866627:139866682:[+] chr19:5133917:5133962:[+] nonBSJ supported CDS

circRNA 5':CCAGCAUCUCCAG-GGCUUCCA-GCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCC 3'


            ||| | ||| |||:|| || ||:| ||| || |||:|||||


target  3':CGUCUCUGUCGUCGCCGGAGUUCCGCAGGCC--CAGU--------GA-GUGUAGAAG 5'

 -33.30 2 RIC-seq
chrX:139866627:139866683:[+] chr19:5133916:5133962:[+] nonBSJ supported CDS

circRNA 5':CCAGCAUCUCCAG-GGCUUCCA-GCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCA 3'


            ||| | ||| |||:|| || ||:| ||| || |||:||||||


target  3':CGUCUCUGUCGUCGCCGGAGUUCCGCAGGCC--CAGU--------GA-GUGUAGAAGG 5'

 -37.50 12 RIC-seq