Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865844:139865889:[+] chr1:39934322:39934376:[+] nonBSJ supported CDS

circRNA 5': UCUUCCAGAAAAAUCUACGUCUUCCACCAAAU----CCA----GGU-CUUC-CAGU 3'


            || ||||: ||| |:||:|||||||| ||| ||| || | |||


target  3':AAGUAGGUUCCGGUAG--GUAGGAGGUGGUUGCGCUUGGUAGUGCCACGACGCGUCU 5'

 -35.10 2 RIC-seq
chrX:139866621:139866644:[+] chr1:39893125:39893146:[+] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGCAUCUCCAGGGCUU 3'


            |||||||||| ||:


target  3':ACAGAAGGUCGACAAAAA--CGGA 5'

 -20.50 3 RIC-seq
chrX:139865687:139865717:[+] chr1:39598197:39598230:[+] nonBSJ supported Intron

circRNA 5':UCUGUGUC-UUCCACCAAAUCCA-AGUC-UUCCA 3'


            |||||: |||| |||| :|||


target  3':CGACACGUCAAGGAGAAUCCGAAGUCAGUGAGGG 5'

 -19.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:39934322:39934376:[+] target 2441775 chr1:39934335-39934336 G>A Lissencephaly_9_with_complex_brainstem_malformation ClinVar