Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865833:139865860:[+] chr1:39951450:39951479:[+] nonBSJ supported 3UTR

circRNA 5': GUC-AGUCAGUGUCUUCCAGAAAAAUCUA 3'


            |: || |||||| || |:||


target  3':ACGAAUCUGUCACAAUAGCGAACCCUGGAC 5'

 -12.70 1 RIC-seq
chrX:139865844:139865881:[+] chr1:39951505:39951548:[+] nonBSJ supported 3UTR

circRNA 5': UCUUCC----AGAA-AAAUCUACGUCUUCCACCAAAUCCAGGU 3'


            |||:|| |||| |||| |||::|: ||||


target  3':AAGAGGGCAAGUCUUAUUUAUAUGUGGGUUACAUACCUCGUCCU 5'

 -18.10 1 RIC-seq
chrX:139866170:139866199:[+] chr1:39952233:39952262:[+] nonBSJ supported 3UTR

circRNA 5':UUGUCUUCCCUUAAAUCUAUAGCUU-CCAAA 3'


            |||| || :|||| ||| ||||


target  3':UACAGU-GGUUGCUCGGAUAGGGAACGGUUC 5'

 -14.90 1 RIC-seq
chrX:139865492:139865521:[+] chr1:39920633:39920664:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAAGAAGCUC--CA--AGUCUUCCAGUA 3'


            ||||||| | ||||| || ||:| |||||


target  3':AAGAAGGUCC-UCGAGUCGUAAUCGGU-GGUCAA 5'

 -27.10 2 RIC-seq
chrX:139865621:139865676:[+] chr1:39853202:39853269:[+] nonBSJ supported CDS

circRNA 5':UUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUC-UUCC-AGCU----------AAUCCAU--GUCU 3'


            |||| ||||||||||||: :|| ||| ||| |||| ||||| |:||


target  3': AGGUACCGU--GUUCCAGAAGGUGUACGGUGACUAUAAAGACUCGAAAGACGUAUGUUAGGAACUCGGAC 5'

 -37.00 1 RIC-seq
chrX:139865735:139865757:[+] chr1:39889782:39889805:[+] nonBSJ supported CDS

circRNA 5':AGAAAAA-UCUAGAUCUUCCAGUC 3'


            || ||| ||| ||||:


target  3':ACUAAAAGAGAGAUAGUCGGUCGA 5'

 -13.40 1 RIC-seq
chrX:139865804:139865852:[+] chr1:39913715:39913745:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGA 3'


            ||||| || |||||||:||||| |||||:


target  3': AGAAGAUC-----------------GGUCAGUUAGUCAAAAAAGGUUC 5'

 -31.20 2 RIC-seq
chrX:139866115:139866151:[+] chr1:39775920:39775956:[+] nonBSJ supported CDS

circRNA 5':ACAUCUUCCAAUGGC-CUCCA--GGU-CUUCCAGACUAUCC 3'


            ||| || ||||| |||| ||| || || |||


target  3':AGUAUUAGACUACCGUGAGGGGACCACGA----CUCCUAGC 5'

 -21.40 2 RIC-seq
chrX:139866226:139866247:[+] chr1:39926324:39926344:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCAAGUCCACGUCU 3'


            ||:||||| :|| |||


target  3':AAGGAGGUCUG-UAGUUUCAGU 5'

 -16.60 1 RIC-seq
chrX:139866413:139866440:[+] chr1:39920645:39920689:[+] nonBSJ supported CDS

circRNA 5': AGCCUACUUGUG-------------UCUUCCAACAAA--GGUA 3'


            ||||:||| | ||||||| :|:|


target  3':GUCGGGUGACCUAGGUACGGUCUUCAAGAAGGUCCUCGAGUCGUA 5'

 -20.00 2 RIC-seq
chrX:139866464:139866482:[+] chr1:39907622:39907639:[+] nonBSJ supported CDS

circRNA 5':UCCAA-CAAAGGUAUGUCUU 3'


            ||| |||| :|| |:||


target  3':CGGUCAGUUUGUAU-CGGA 5'

 -10.10 1 RIC-seq
chrX:139866476:139866517:[+] chr1:39788660:39788681:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACAAAGGUACGUCUUCCAGAAAAUCCACGUCU 3'


            | ||:||| ||:|||||| ||:|


target  3': GGAGGAGG------------AGGAGGUCU-------GCGGC 5'

 -21.70 2 RIC-seq
chrX:139866784:139866803:[+] chr1:39926324:39926344:[+] nonBSJ supported CDS

circRNA 5':AUCUUCU-GACAUUCAGGUCU 3'


            ||:||: |||||: |:|||


target  3':AAGGAGGUCUGUAGUUUCAGU 5'

 -19.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:39775920:39775956:[+] target - chr1:39775921-39775922 G>A BTCA-JP ICGC
chr1:39913715:39913745:[+] target - chr1:39913719-39913720 G>C BTCA-JP ICGC
chrX:139866784:139866803:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC