Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865335:139865347:[+] chr1:39845965:39845977:[+] nonBSJ supported CDS

circRNA 5':UCCAGGGUUUCCG 3'


            ||||||:||||


target  3':CGGUCCCGAAGGA 5'

 -21.60 7 RIC-seq
chrX:139865376:139865401:[+] chr1:39833829:39833853:[+] nonBSJ supported CDS

circRNA 5':ACUCCG---GGUCUUCCAGCGACUUCAAG 3'


            |||| ||||||||| |:|||


target  3':AGAGGACAACCAGAAGGUAA---AGGUU 5'

 -21.50 16 RIC-seq
chrX:139865527:139865563:[+] chr1:39784254:39784287:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGCAAAUCCAGUCUUCCAGCAAUUACUGG 3'


            |||| | || ||: |||| |||


target  3':GCAGACGACCGACUCGACGAGGCUUUCGUGA--GAC 5'

 -13.50 3 RIC-seq
chrX:139865692:139865708:[+] chr1:39838178:39838195:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCACCAAA--UCCA 3'


            |||||||||| |||


target  3':AAGAAGGUGGUCUCAAGG 5'

 -19.80 2 RIC-seq
chrX:139865736:139865765:[+] chr1:39913724:39913757:[+] nonBSJ supported CDS

circRNA 5': GAAAAAUCUAGAUCUU----CCAGUCAAUCAGUG 3'


            || ||| ||||| |||||||||||||


target  3':ACUGAG-AGACGUAGAAGAUCGGUCAGUUAGUCAA 5'

 -29.00 20 RIC-seq
chrX:139865742:139865765:[+] chr1:39913724:39913752:[+] nonBSJ supported CDS

circRNA 5': UCUAGAUCUU----CCAGUCAAUCAGUG 3'


            ||| ||||| |||||||||||||


target  3':GAGACGUAGAAGAUCGGUCAGUUAGUCAA 5'

 -27.50 1 RIC-seq
chrX:139865861:139865900:[+] chr1:39852914:39852948:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCACCAAAUCCAGGUCUUCCAGUCAAUCC-ACAUC 3'


            ||| |||| |||||||:|| | || ||| ||||


target  3':AUAGUAGGUU-----GGUCCAGGAGUUGAG-UAGUUUGUAA 5'

 -28.00 15 RIC-seq
chrX:139866225:139866251:[+] chr1:39845965:39845985:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGCAAGUCCACGUCUUCCA 3'


            || |||||| || | |||||


target  3': CAUUAGGUCG-----GUCCCGAAGGA 5'

 -16.60 8 RIC-seq
chrX:139866319:139866349:[+] chr1:39852920:39852944:[+] nonBSJ supported CDS

circRNA 5':UUCCGAAAAAUCCAGGUCUUCCAGGAAAUCC 3'


            |||:| |||||||:| ||: |||


target  3':UAGGUU-----GGUCCAGGA-GUUGAGUAGU 5'

 -22.40 1 RIC-seq
chrX:139866319:139866362:[+] chr1:39852901:39852944:[+] nonBSJ supported CDS

circRNA 5':UUCCGAAAAAUCCAGGUCUUC----CAGGAAAUCCGUGUCUUCCA-GCA 3'


            |||:| |||||||:|| || |||: ||: ||


target  3':UAGGUU-----GGUCCAGGAGUUGAGUAGUUUGUAAACGACCUUGACGA 5'

 -23.80 1 RIC-seq
chrX:139866363:139866408:[+] chr1:39852910:39852945:[+] nonBSJ supported CDS

circRNA 5':AAUCCACGUCUUCCAACAAAGCCAUGUCUUC----CAUCAAAUUAAUGUC 3'


            ||||| :||| |||:|| |||||||: ||:


target  3':GUAGGU--------------UGGUCCAGGAGUUGAGUAGUUUGUAAACGA 5'

 -24.80 1 RIC-seq
chrX:139866369:139866402:[+] chr1:39852916:39852948:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGCCAUGUCUUC----CAUCAAAUU 3'


            ||| |||| :||| |||:|| |||||||:


target  3':AUAGUAGGU-----UGGUCCAGGAGUUGAGUAGUUUGU 5'

 -25.70 2 RIC-seq
chrX:139866369:139866408:[+] chr1:39852910:39852948:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGCCAUGUCUUC----CAUCAAAUUAAUGUC 3'


            ||| |||| :||| |||:|| |||||||: ||:


target  3':AUAGUAGGU-----UGGUCCAGGAGUUGAGUAGUUUGUAAACGA 5'

 -27.70 59 RIC-seq
chrX:139866405:139866429:[+] chr1:39823281:39823309:[+] nonBSJ supported CDS

circRNA 5':UGUC-UUCCAGCCUACUUGUG---UCUUC 3'


            ||| |||||:|| ||| ||||


target  3':CUAGCAAGGUUGGUCGAAAGUUUGAGAAA 5'

 -17.80 15 RIC-seq
chrX:139866490:139866548:[+] chr1:39853561:39853602:[+] nonBSJ supported CDS

circRNA 5':AGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUCCA 3'


            ||: :|||| :|||| ||| |||| || |||


target  3':ACCGA--GGAAGUU-----------GGAAGAAAAGUUAUA---AGAAUUUCGAA-AGGA 5'

 -13.20 20 RIC-seq
chrX:139866490:139866557:[+] chr1:39853553:39853602:[+] nonBSJ supported CDS

circRNA 5':AGGUACGUCUUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUCCACGUCUUCCA 3'


            ||: :|||| :|||| ||| |||| || ||| | :|||


target  3':ACCGA--GGAAGUU-----------GGAAGAAAAGUUAUA---AGAAUUUCGAA-AGGACCUUGAGG 5'

 -16.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:39845965:39845977:[+] target - chr1:39845966-39845967 G>C RECA-EU ICGC
chr1:39845965:39845985:[+] target - chr1:39845966-39845967 G>C RECA-EU ICGC
chr1:39852901:39852944:[+] target - chr1:39852926-39852927 G>T LICA-CN ICGC
chr1:39852910:39852945:[+] target - chr1:39852926-39852927 G>T LICA-CN ICGC
chr1:39852910:39852948:[+] target - chr1:39852926-39852927 G>T LICA-CN ICGC
chr1:39852914:39852948:[+] target - chr1:39852926-39852927 G>T LICA-CN ICGC
chr1:39852916:39852948:[+] target - chr1:39852926-39852927 G>T LICA-CN ICGC
chr1:39852920:39852944:[+] target - chr1:39852926-39852927 G>T LICA-CN ICGC