Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866637:139866658:[+]	chr5:179155656:179155677:[+]	nonBSJ supported	3UTR	circRNA 5':CAGGGCUUC-CAGCAUCU-GCUCG 3' \|:\|: \|\| \|\|\| \|\|\| \|\|\|\| target 3': UUCUUUAGUGUC-UAGUUCGAGA 5'	-13.90	1	RIC-seq
chrX:139865771:139865793:[+]	chr5:179149900:179149929:[+]	nonBSJ supported	CDS	circRNA 5': CAGAAAGAAA-UCC-AGGUCUU---CCA 3' \|\|:\|\|\|:\|\| \|\| \|\|\|\|\| \|\|\| target 3':AGUUUUUUUUACAGUCUCCAGUACCUGGUG 5'	-13.70	1	RIC-seq
chrX:139865771:139865794:[+]	chr5:179149900:179149929:[+]	nonBSJ supported	CDS	circRNA 5': CAGAAAGAAA-UCC-AGGUCUU---CCAG 3' \|\|:\|\|\|:\|\| \|\| \|\|\|\|\| \|\|\| target 3':AGUUUUUUUUACAGUCUCCAGUACCUGGUG 5'	-14.30	13	RIC-seq
chrX:139865810:139865832:[+]	chr5:179149900:179149929:[+]	nonBSJ supported	CDS	circRNA 5': CAGAAAGAAA-UCC-AGGUCUU---CCA 3' \|\|:\|\|\|:\|\| \|\| \|\|\|\|\| \|\|\| target 3':AGUUUUUUUUACAGUCUCCAGUACCUGGUG 5'	-13.70	1	RIC-seq
chrX:139865810:139865833:[+]	chr5:179149900:179149929:[+]	nonBSJ supported	CDS	circRNA 5': CAGAAAGAAA-UCC-AGGUCUU---CCAG 3' \|\|:\|\|\|:\|\| \|\| \|\|\|\|\| \|\|\| target 3':AGUUUUUUUUACAGUCUCCAGUACCUGGUG 5'	-14.30	7	RIC-seq
chrX:139866470:139866503:[+]	chr5:179136872:179136899:[+]	nonBSJ supported	CDS	circRNA 5':AAAGGUAUGUCUUCCAACAAAGGUACGUCUUCCA 3' \|\|\|\| \|\|\|\|\| \|\| \|\| \|\| \|\|\| target 3':AUUCCC--CAGAACA--GUA-CCUUGACU-AGGA 5'	-12.90	27	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr5:179149900:179149929:[+]	target	-	chr5:179149919-179149920	A>T	LICA-CN	ICGC
chr5:179155656:179155677:[+]	target	-	chr5:179155658-179155659	A>T	PACA-CA	ICGC