Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865942:139865975:[+] chr14:64153148:64153178:[-] nonBSJ supported CDS

circRNA 5':CUGAAGAUCCACGU-C--UUCCAGAAAAUCCAUGUCU 3'


            || ||||||||:| | |||||| |||: ||


target  3': AC-UCUAGGUGUACGUUAAGGUCGU---GGUGAAG 5'

 -26.70 1 RIC-seq
chrX:139865945:139865972:[+] chr14:64153149:64153176:[-] nonBSJ supported CDS

circRNA 5':AAGAUCCACGU-C--UUCCAGAAAAUCCAUG 3'


            ||||||||:| | |||||| |||:


target  3':CUCUAGGUGUACGUUAAGGUCGU---GGUGA 5'

 -24.90 2 RIC-seq
chrX:139865945:139865975:[+] chr14:64153149:64153178:[-] nonBSJ supported CDS

circRNA 5':AAGAUCCACGU-C--UUCCAGAAAAUCCAUGUCU 3'


            ||||||||:| | |||||| |||: ||


target  3':CUCUAGGUGUACGUUAAGGUCGU---GGUGAAG 5'

 -26.60 33 RIC-seq
chrX:139865947:139865975:[+] chr14:64153152:64153178:[-] nonBSJ supported CDS

circRNA 5':GAUCCACGU-C--UUCCAGAAAAUCCAUGUCU 3'


            ||||||:| | |||||| |||: ||


target  3': UAGGUGUACGUUAAGGUCGU---GGUGAAG 5'

 -21.80 1 RIC-seq