Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865481:139865534:[+] chr11:63886257:63886301:[+] nonBSJ supported 3UTR

circRNA 5': GGACAAUCCAUGUCUUCCA----AGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCC 3'


            ||| ||||:|| |||| |:||| || |||||| |||:|


target  3':UCCU----GGUAUAG-AGGUCCCGUUUUCUAGAAA-AGAAGGGAG--------AGAGGA 5'

 -29.60 25 RIC-seq
chrX:139865481:139865538:[+] chr11:63886246:63886301:[+] nonBSJ supported 3UTR

circRNA 5': GGACAAUCCAUGUCUUCCA----AGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCC-AGCA 3'


            ||| ||||:|| |||| |:||| || |||||| || |||


target  3':UCCU----GGUAUAG-AGGUCCCGUUUUCUAGAAA-AGAAGGGAGAG-AGGAAACACUCCUCG 5'

 -29.90 1 RIC-seq
chrX:139865487:139865534:[+] chr11:63886257:63886298:[+] nonBSJ supported 3UTR

circRNA 5':UCCAUGUCUUCCA----AGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCC 3'


            ||||:|| |||| |:||| || |||||| |||:|


target  3':UGGUAUAG-AGGUCCCGUUUUCUAGAAA-AGAAGGGAG--------AGAGGA 5'

 -27.50 4 RIC-seq