Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865934:139865974:[+] chr20:34145230:34145270:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCUGAAGAUCCACG-UCUUCCAGAAAA-UCCAUGUC 3'


            ||||||||: ||||| ||||| || || ||:


target  3':AACAGAAGGGA-UCUAGUUAAAAGAAGACCUACCGAGC-ACGA 5'

 -26.40 22 RIC-seq
chrX:139865936:139865974:[+] chr20:34145230:34145269:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCUGAAGAUCCACG-UCUUCCAGAAAA-UCCAUGUC 3'


            |||||||: ||||| ||||| || || ||:


target  3':ACAGAAGGGA-UCUAGUUAAAAGAAGACCUACCGAGC-ACGA 5'

 -25.70 1 RIC-seq