Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866568:139866587:[+] chr19:6735933:6735952:[-] nonBSJ supported 5UTR

circRNA 5':GUCUUCCA-ACUAAGCUACGU 3'


            ||| ||| ||: |:|: ||


target  3':GAGACGGUCUGGCUUGG-GCC 5'

 -10.70 1 RIC-seq
chrX:139866579:139866602:[+] chr19:6735926:6735951:[-] nonBSJ supported 5UTR

circRNA 5':AAGCU-ACGUCUUCCA-ACA-AAUCCA 3'


            ||| || ||| ||| || ||:||


target  3':CUCGCUUG-AGACGGUCUGGCUUGGGC 5'

 -14.60 1 RIC-seq
chrX:139866619:139866650:[+] chr19:6735924:6735953:[-] nonBSJ supported 5UTR

circRNA 5':CAGGUCUUCCAGCAUCU-CCAGGGCU--UCCAGCA 3'


            ||| | |:| ||| ||||: | :|| ||


target  3': UCCUC--GCUUG-AGACGGUCUGGCUUGGGCCG 5'

 -18.60 1 RIC-seq
chrX:139866638:139866659:[+] chr19:6735929:6735952:[-] nonBSJ supported 5UTR

circRNA 5':AGGGCUU--CCAGCAUCU-GCUCGU 3'


            |::||: |||| |:| :|:||


target  3':GCUUGAGACGGUC-UGGCUUGGGCC 5'

 -18.20 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866579:139866602:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC