Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865415:139865461:[+] chr2:118766173:118766223:[-] nonBSJ supported CDS

circRNA 5': UCAAGGUCUUCCAGAUAAUCC-UGAGCUUC-CAGAAAA-UCCACAUCUUC 3'


            |||||: | |||||| || | |:||| || || |||||||


target  3':UGGUUCUCG-AGGUCUUAAAGUCAGUUGAACUGUAAAACAAGAAGUAGAAGA 5'

 -24.70 1 RIC-seq
chrX:139865415:139865476:[+] chr2:118766173:118766237:[-] nonBSJ supported CDS

circRNA 5': UCAAGGUCUUCCAGAUAAUCC-UGAGCUUC-CAGAAAA-UCCACAUCUUCCAGACAAUCCAUGUC 3'


            |||||: | |||||| || | |:||| || || ||||||| ||||: |


target  3':UGGUUCUCG-AGGUCUUAAAGUCAGUUGAACUGUAAAACAAGAAGUAGAAGAGAACAAAGGUGGAU 5'

 -30.80 17 RIC-seq
chrX:139865433:139865480:[+] chr2:118766173:118766217:[-] nonBSJ supported CDS

circRNA 5':UCCU-GAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCC 3'


            || |||| ||||||| || || | |||| |||||


target  3':UGGUUCUCG-AGGUCUUAAAGUC--AGUUGAACUGUAAAACA-AGAAGU 5'

 -26.70 22 RIC-seq
chrX:139865433:139865492:[+] chr2:118766173:118766235:[-] nonBSJ supported CDS

circRNA 5':UCCU-GAGCUUCCAGAAAAUCCACAUCUUCCAGACAA-----UCCAUGUCUUC-CGGACAAUCCAUG 3'


            || |||| ||||||| || || | |||| || :||||| | ||||:


target  3':UGGUUCUCG-AGGUCUUAAAGUC--AGUUGAACUGUAAAACAAGAAGUAGAAGAGAACAA-AGGUGG 5'

 -30.60 1 RIC-seq
chrX:139865436:139865480:[+] chr2:118766177:118766217:[-] nonBSJ supported CDS

circRNA 5':UGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCAUGUCUUCC 3'


            |||| ||||||| || || | |||| |||||


target  3':UCUCG-AGGUCUUAAAGUC--AGUUGAACUGUAAAACA-AGAAGU 5'

 -25.40 2 RIC-seq
chrX:139865436:139865492:[+] chr2:118766177:118766235:[-] nonBSJ supported CDS

circRNA 5':UGAGCUUCCAGAAAAUCCACAUCUUCCAGACAA-----UCCAUGUCUUC-CGGACAAUCCAUG 3'


            |||| ||||||| || || | |||| || :||||| | ||||:


target  3':UCUCG-AGGUCUUAAAGUC--AGUUGAACUGUAAAACAAGAAGUAGAAGAGAACAA-AGGUGG 5'

 -29.30 1 RIC-seq