Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865667:139865697:[+] chr6:38645020:38645051:[-] nonBSJ supported 3UTR

circRNA 5': AUC-CA-UGUCUUCCAGAAAAAUCUGU-GUCUUC 3'


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target  3':UUAGUGUAACA-AAGGAAAGA--AGACUUUAGAGU 5'

 -12.90 1 RIC-seq
chrX:139865760:139865779:[+] chr6:38644880:38644903:[-] nonBSJ supported 3UTR

circRNA 5':UCAGUGUCUU-----CCAGAAAGAA 3'


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target  3':CGUGAC-GAACUUUUGGUCUUACUG 5'

 -11.70 1 RIC-seq