Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865750:139865784:[+] chr6:21597454:21597486:[+] nonBSJ supported 3UTR

circRNA 5':UUCCAGUCAAUCAGUGUCUUCCAGAAA--GAAAUCCA 3'


            ||||| || ||| | |||||


target  3':CAGGUC-GU--GUCUAAACUCAACGCAAAC-UUAGGA 5'

 -12.20 1 RIC-seq
chrX:139866276:139866312:[+] chr6:21597147:21597187:[+] nonBSJ supported 3UTR

circRNA 5': CCAU--GUCUUCCA--GAAAAUCCUUGUCUUCC-C-UCAAAUC 3'


            |||: |:|:|||| || :||:||| || | |||||:


target  3':UGGUGAGCGGGAGGUGACUGACGGGGACAU--GGUGUAGUUUG 5'

 -28.20 1 RIC-seq
chrX:139866526:139866539:[+] chr6:21597999:21598012:[+] nonBSJ supported 3UTR

circRNA 5': AGCCAUGUCUUCCA 3'


            |:||| |:| :||


target  3':AUUGGU-CGGCGGGA 5'

 -12.20 2 RIC-seq
chrX:139865911:139865929:[+] chr6:21596042:21596064:[+] nonBSJ supported CDS

circRNA 5':AAUCCAGGUCU---UCCA--GCCA 3'


            |||||||||: || |||


target  3': UAGGUCCAGGGCCAGCUCGCGGC 5'

 -20.90 2 RIC-seq
chrX:139865967:139865988:[+] chr6:21595217:21595238:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAGAAAAUCCA 3'


            || |||||:|| :||


target  3':UGGAACAGAGGGAAGAGGGGGC 5'

 -17.50 1 RIC-seq
chrX:139865985:139866018:[+] chr6:21595208:21595238:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAGUAACCUCCCAGUCUUCCAGA 3'


            || |||||:|| |:||| | ||| ||


target  3':UGGAACAGAGGGAAGA--GGGGGCC-GAACCUCC 5'

 -23.00 1 RIC-seq
chrX:139866341:139866373:[+] chr6:21596054:21596086:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCAGC--AAAUCCACGUCU 3'


            ||| ||| | ||: || ||||||| |||:


target  3':GCCUC--GGCCC-GAGCUUCAAUUUUAGGUCCAGGG 5'

 -20.50 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:21597999:21598012:[+] target - chr6:21598004-21598005 G>T LICA-CN ICGC