Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865433:139865507:[+] chr6:42418913:42418962:[-] nonBSJ supported 5UTR

circRNA 5':UCCUGAGCUUCCAGAAAAUCCACAUCUUCCA-GACAAUC-CAUGUCUUCCGGACAAUCC-AUGUCUUCCAAGAAG-CUC 3'


            ||| ||| ||| :|||| |||| || |||||| |:| ||||| |:


target  3':UGGAACCGACA---------------AAGACGUUGUUCACGUAC------CC-GUUAGGCUGC-------UCUUCUGGU 5'

 -22.10 9 RIC-seq
chrX:139865458:139865507:[+] chr6:42418923:42418962:[-] nonBSJ supported 5UTR

circRNA 5':CUUCCA-GACAAUC-CAUGUCUUCCGGACAAUCC-AUGUCUUCCAAGAAG-CUC 3'


            ||| :|||| |||| || |||||| |:| ||||| |:


target  3':AAAGACGUUGUUCACGUAC------CC-GUUAGGCUGC-------UCUUCUGGU 5'

 -19.50 1 RIC-seq