Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865457:139865505:[+] chr2:71413275:71413335:[-] nonBSJ supported 3UTR

circRNA 5':UCUUCCAGACAA--UCCA-UGUCU-UCC----GGACAAUCCAUGU-----CUUCCAAGAAGC 3'


            ||:|||| :||| || ||| :|||| ||||: || | ||||||


target  3':CGAGGGUCGGAAAGGGGUCACUUCCAGGUUGUUCUGUGU-GUACGUAAAAGACGAUUCUUCC 5'

 -28.90 4 RIC-seq
chrX:139865503:139865539:[+] chr2:71413274:71413307:[-] nonBSJ supported 3UTR

circRNA 5':AGCUCCAAGUCU---UCCAGUAAAUCAAGUCUUCCAGCAA 3'


            ||||| ||:|| :||||| ||| ||||:||


target  3':CCGAGGGUCGGAAAGGGGUCAC----UUCC--AGGUUGUU 5'

 -29.80 16 RIC-seq
chrX:139865757:139865769:[+] chr2:71413535:71413548:[-] nonBSJ supported 3UTR

circRNA 5': CAAUCAGUGUCUU 3'


            | ||||||||:


target  3':CGGGAGUCACAGGU 5'

 -14.10 1 RIC-seq
chrX:139865798:139865847:[+] chr2:71413505:71413548:[-] nonBSJ supported 3UTR

circRNA 5':AUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUU 3'


            ||||||||| | ||||| | ||: ||||:| ||||||||:


target  3':AAGUCACAGA----C-UUCUUCUGAUCUUUACGGUCGGG-AGUCACAGGU 5'

 -40.80 25 RIC-seq
chrX:139865762:139865784:[+] chr2:71416977:71416999:[-] nonBSJ supported CDS

circRNA 5': AGUGUCUUCCAGAAAGAAAUCCA 3'


            |:|:|||| ||||| ||


target  3':UUUAUAGAA-GUCUUAGUACUGGA 5'

 -13.40 11 RIC-seq
chrX:139865785:139865824:[+] chr2:71416980:71417018:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGUCAAUCAGUG-UCUUC-CAGAAAGAAA-UCCAG 3'


            ||||| ||| ||||| || :|||| | || || ||||


target  3':AUAGAA-GUC--UUAGU-ACUGGAAGUGACUGACUGUCAGGUA 5'

 -20.40 1 RIC-seq
chrX:139865801:139865823:[+] chr2:71416977:71416999:[-] nonBSJ supported CDS

circRNA 5': AGUGUCUUCCAGAAAGAAAUCCA 3'


            |:|:|||| ||||| ||


target  3':UUUAUAGAA-GUCUUAGUACUGGA 5'

 -13.40 6 RIC-seq
chrX:139866504:139866520:[+] chr2:71429590:71429603:[-] nonBSJ supported CDS

circRNA 5': GAAAAUCCACGUCUUCC 3'


            | |||||| |||||


target  3':AC-UUUAGG---AGAAGU 5'

 -9.70 1 RIC-seq
chrX:139866505:139866520:[+] chr2:71429591:71429603:[-] nonBSJ supported CDS

circRNA 5':AAAAUCCACGUCUUCC 3'


            |||||| |||||


target  3':CUUUAGG---AGAAGU 5'

 -9.60 4 RIC-seq
chrX:139866625:139866643:[+] chr2:71417092:71417112:[-] nonBSJ supported CDS

circRNA 5':UUCCAGCAUCUCCAGG--GCU 3'


            ||||||||||| || ||


target  3':UAGGUCGUAGAGAACCUUCGU 5'

 -23.60 1 RIC-seq
chrX:139866625:139866658:[+] chr2:71417092:71417134:[-] nonBSJ supported CDS

circRNA 5':UUCCAGCAUCUC-------CAG-GGCUUCCAGCA--UC-UGCUCG 3'


            ||||||||||| ||| || ||||: || |||||


target  3':UAGGUCGUAGAGAACCUUCGUCGCC--AGGUUCUUCAGAACGAGG 5'

 -34.80 2 RIC-seq
chrX:139866625:139866676:[+] chr2:71417092:71417151:[-] nonBSJ supported CDS

circRNA 5':UUCCAGCAUCUC-------CAG-GGCUUCCA---------GCAUCUGCUCGUCUUCCAACAUCUCCACG 3'


            ||||||||||| ||| || |||| || :|||| ||:||| |||||


target  3':UAGGUCGUAGAGAACCUUCGUCGCC--AGGUUCUUCAGAACGAGGACGUCAAGGAGG------AGGUG 5'

 -49.40 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:71416980:71417018:[-] target - chr2:71417008-71417009 T>G PACA-CA ICGC
chr2:71417092:71417134:[-] target - chr2:71417134-71417135 C>T LAML-KR ICGC
chr2:71417092:71417151:[-] target - chr2:71417134-71417135 C>T LAML-KR ICGC