Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866279:139866341:[+] chr2:74091744:74091811:[+] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGAAAAUCCUU--GUCU-UCCCU-----CAAAUC--CAUAGCUUCCGAAAAAUCCAG-GUCUUCCA 3'


            |:||: | ||:|| ||| ||||| ||||| ||| :| || ||| ||: ||||| |


target  3':UCGGAG---CCCUUGGGUCCUCAGUCAGGGAAAUCGGUUUAUCAGUAAUG--GGAAAGUUAUGUUACAGAAAG 5'

 -28.70 1 RIC-seq
chrX:139866279:139866355:[+] chr2:74091748:74091811:[+] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGAAAAUCCUU--GUCU-UCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUU--CCAGGA-AAU-CCGUGUCU 3'


            |:||: | ||:|| ||| ||||| ||||: |||| :||| || ||| | :||||


target  3':UCGGAG---CCCUUGGGUCCUCAGUCAGGGAA-------AUCGG------UUUA---UCAGUAAUGGGAAAGUUAUGUUACAG 5'

 -28.20 5 RIC-seq
chrX:139866279:139866359:[+] chr2:74091744:74091811:[+] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGAAAAUCCUU--GUCU-UCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUU--CCAGGA-AAU-CCGUGUCUUCCA 3'


            |:||: | ||:|| ||| ||||| ||||: |||| :||| || ||| | :|||||| |


target  3':UCGGAG---CCCUUGGGUCCUCAGUCAGGGAA-------AUCGG------UUUA---UCAGUAAUGGGAAAGUUAUGUUACAGAAAG 5'

 -30.50 43 RIC-seq
chrX:139866283:139866359:[+] chr2:74091744:74091801:[+] nonBSJ supported Intron

circRNA 5':UUCCAGAAAAUCCUUGUCU-UCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUU--CCAGGA-AAU-CCGUGUCUUCCA 3'


            ||||| ||| ||||| ||||: |||| :||| || ||| | :|||||| |


target  3':UGGGUCCU-------CAGUCAGGGAA-------AUCGG------UUUA---UCAGUAAUGGGAAAGUUAUGUUACAGAAAG 5'

 -26.00 1 RIC-seq
chrX:139866290:139866359:[+] chr2:74091744:74091803:[+] nonBSJ supported Intron

circRNA 5':AAAUCCUU--GUCU-UCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUU--CCAGGA-AAU-CCGUGUCUUCCA 3'


            ||:|| ||| ||||| ||||: |||| :||| || ||| | :|||||| |


target  3':CUUGGGUCCUCAGUCAGGGAA-------AUCGG------UUUA---UCAGUAAUGGGAAAGUUAUGUUACAGAAAG 5'

 -27.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:74091744:74091811:[+] target - chr2:74091805-74091806 C>T LAML-KR ICGC
chr2:74091748:74091811:[+] target - chr2:74091805-74091806 C>T LAML-KR ICGC
chrX:139866279:139866341:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866279:139866355:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866279:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866283:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866290:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC