Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866754:139866807:[+] chr19:33936983:33937052:[-] nonBSJ supported Intron

circRNA 5':UCCAUGUCUU-CCAAC-GUCUC----CAGUG--UGCUGAU--CUU-CUGAC-AUUC----AGGUCUUCCA 3'


            ||| ||||| || :|| |||| |:|| || |:| || |||| || ||||||


target  3':CGGUUCAGAACGGCAUUUAGUUUUCUGUCAGUGAUGAGUAAUGGAUGAAUCUUAAGGGGCUCAAGAAGGA 5'

 -27.70 1 RIC-seq
chrX:139866757:139866823:[+] chr19:33936977:33937040:[-] nonBSJ supported Intron

circRNA 5':AUGUCUUCCAACGUCUCCAGUGUGCUG---AUCUUCUGACAUUCAGGUCUUCCAGUGUCUGC----AAUAUCCA 3'


            || |||| |||| |||:| ||| |||| ||| ||: |::||:| ||| :||


target  3':AACUAACGGUU-CAGA------ACGGCAUUUAGUUUUCUGUCAGUGAUGAGUA--AUGGAUGAAUCUUAAGGG 5'

 -27.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866754:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866757:139866823:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC