Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866345:139866379:[+] chr5:7900283:7900311:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAAC 3'


            ||||: :|| |||| | |||| |||:| |||


target  3':CUAGGU-UAG-AGGU-G---AGGUACAGGAAGUUC 5'

 -21.50 1 RIC-seq
chrX:139866346:139866366:[+] chr5:7900278:7900298:[+] nonBSJ supported 3UTR

circRNA 5':AUCCGUGUCUUCCAGCAAAUC 3'


            |||:||||:| ||: ||||


target  3':GAGGUACAGGAAGUUCUUUAC 5'

 -16.70 1 RIC-seq
chrX:139866363:139866396:[+] chr5:7900284:7900311:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAU 3'


            ||||| :|| |||| |||||||:| ||


target  3':CUAGGU-UAG-AGGUGA----GGUACAGGAAGUU 5'

 -25.00 1 RIC-seq
chrX:139866363:139866402:[+] chr5:7900278:7900311:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUU 3'


            ||||| :|| |||| |||||||:| || ||||


target  3':CUAGGU-UAG-AGGUGA----GGUACAGGAAGUUCUUUAC 5'

 -26.00 1 RIC-seq
chrX:139866363:139866408:[+] chr5:7900276:7900311:[+] nonBSJ supported 3UTR

circRNA 5':AAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUC 3'


            ||||| :|| |||| |||||||:| |||| |||||


target  3':CUAGGU-UAG-AGGUGA----GGUACAGGA---AGUUCU-UUACAA 5'

 -27.80 40 RIC-seq