Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866215:139866251:[+] chr20:47888098:47888152:[-] nonBSJ supported CDS

circRNA 5':AGGAAA-UCC---------GUGUCUUCCAGCAA---GUCCACG-----UCUUCCA 3'


            || ||| ||| |||| || |:|| ||||||


target  3':ACCAAGGAGGAAGGAACUACACCCAAGGACGGGUACCGGGAUUUAGAGAGAAGGG 5'

 -22.30 1 RIC-seq
chrX:139866215:139866251:[+] chr20:47888118:47888152:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCU----UCCAGCAAGUCCACGUCUUCCA 3'


            || ||| ||:|: :|| ||:|| ||||||


target  3':ACCCA-AGG-ACGGGUACCGGGA--UUUAGAG--AGAAGGG 5'

 -21.70 1 RIC-seq
chrX:139866510:139866539:[+] chr20:47863954:47863979:[-] nonBSJ supported CDS

circRNA 5':CCACGUCUUCCAACCAAGCCAUGUCUUCCA 3'


            ||||| || || ||||| ||:||


target  3':UGUGCAC--GG--GGAGAGGUACCGAGGGG 5'

 -23.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr20:47863954:47863979:[-] target - chr20:47863957-47863958 C>T PACA-CA ICGC