Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866025:139866055:[+] chr20:47570266:47570298:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCCAACAAUCCAAGUCU--UCCGGAU 3'


            |||||:| || |||:||


target  3':CGCAGAGGUAAAAGACACGAAUGAAAAGGUCUU 5'

 -16.10 1 RIC-seq
chrX:139866025:139866089:[+] chr20:47570268:47570313:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCCAACAAUCCAAGUCUUCCGGAUAAUUUGGGUCUUC-----CUGAAAAUCUACGUCUUCCAA 3'


            | |||| |||: || || ||||:| ||| ||| |||||


target  3': GGAGAA--------------AGAGACCC------ACGCAGAGGUAAAAGACACGA--AUGAA-AAGGUC 5'

 -19.00 1 RIC-seq
chrX:139866025:139866089:[+] chr20:47570268:47570314:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCCAACAAUCCAAGUCUUCCGGAUAAUUUGGGUCUUC-----CUGAAAAUCUACGUCUUCCAA 3'


            | |||| |||: || || ||||:| ||| ||| |||||


target  3':CGGAGAA--------------AGAGACCC------ACGCAGAGGUAAAAGACACGA--AUGAA-AAGGUC 5'

 -19.60 2 RIC-seq