Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866240:139866258:[+] chr1:211922598:211922617:[-] nonBSJ supported 3UTR

circRNA 5':CCACGUCUUCCAACAAAGC 3'


            |||: || |||


target  3':UGUGUCACAACCUGACUCGA 5'

 -4.70 2 RIC-seq
chrX:139866585:139866621:[+] chr1:211922946:211922982:[-] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAAAUCC--AUGUCUUCCUAUAUCUCCAG 3'


            |||||| ||| ||||| ||||||


target  3':UCAGAAGAUCCUACUAAAAUACUAAAGGAGA-AGAGGU 5'

 -22.00 1 RIC-seq
chrX:139866585:139866624:[+] chr1:211922946:211922986:[-] nonBSJ supported 3UTR

circRNA 5':CGUCUUCCAACAAAUCC--AUGUCUUCCUAUAUCUCCAGGUC 3'


            |||||| ||| ||||| ||||||::|


target  3':UCAGAAGAUCCUACUAAAAUACUAAAGGAGA-AGAGGUUUAC 5'

 -24.30 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866585:139866621:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866585:139866624:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC