Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865368:139865405:[+] chrX:103047010:103047047:[+] nonBSJ supported 3UTR

circRNA 5':UUCCA------ACAACUCCGGGUCUUCCAGCGACUUCAAGUCUU 3'


            |||| |||| |:|| |||| ||:|||


target  3':UGGGUUUCAAUUGUUUUUGUCCUUUU-----CUGAC-UUUAGAC 5'

 -12.10 12 RIC-seq
chrX:139865368:139865405:[+] chrX:103047011:103047047:[+] nonBSJ supported 3UTR

circRNA 5':UUCCA------ACAACUCCGGGUCUUCCAGCGACUUCAAGUCUU 3'


            |||| |||| |:|| |||| ||:|||


target  3':UGGGUUUCAAUUGUUUUUGUCCUUUU-----CUGAC-UUUAGA 5'

 -11.60 36 RIC-seq
chrX:139865372:139865405:[+] chrX:103047011:103047038:[+] nonBSJ supported 3UTR

circRNA 5': AACAACUCCGGGUCUUCCAGCGACUUCAAGUCUU 3'


            ||||| |:|| |||| ||:|||


target  3':AUUGUUUUUGUCCUUUU-----CUGAC-UUUAGA 5'

 -11.10 1 RIC-seq
chrX:139865392:139865422:[+] chrX:103047038:103047064:[+] nonBSJ supported 3UTR

circRNA 5':CGACUUCAAGUCUUCCAAUAAUCUCAAGGUC 3'


            ||||| |||:| |||:||


target  3': CUGAAAAAAAAAAAA--AUUGG-GUUUCAA 5'

 -10.50 1 RIC-seq
chrX:139865392:139865453:[+] chrX:103047011:103047064:[+] nonBSJ supported 3UTR

circRNA 5':CGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCU-GAG-CUUCCAGAAAAUCC 3'


            ||||| |||:| |||:|| ||:| :|| || | |||||


target  3': CUGAAAAAAAAAAAA--AUUGG-GUUUCAAUU-GUUUUUGUCCUUUUCUGA----C-UUUAGA 5'

 -13.10 7 RIC-seq
chrX:139865409:139865440:[+] chrX:103047014:103047050:[+] nonBSJ supported 3UTR

circRNA 5':AUAAUCUCAAGGUCUUC-----CAGAUAAUC-CUGAGC 3'


            |||:| |||:|| | ||| || ||||:


target  3':AAUUGG-GUUUCAAUUGUUUUUGUCCUUUUCUGACUUU 5'

 -11.10 2 RIC-seq
chrX:139865409:139865453:[+] chrX:103047011:103047050:[+] nonBSJ supported 3UTR

circRNA 5':AUAAUCUCAAGGUCUUCCAGAUAAUCCU-GAG-CUUCCAGAAAAUCC 3'


            |||:| |||:|| ||:| :|| || | |||||


target  3':AAUUGG-GUUUCAAUU-GUUUUUGUCCUUUUCUGA----C-UUUAGA 5'

 -11.50 1 RIC-seq
chrX:139865429:139865450:[+] chrX:103047029:103047050:[+] nonBSJ supported 3UTR

circRNA 5':AUAAUCCUGAGCUUCCAGAAAA 3'


            |||:|| :|| | ||:|||


target  3':AAUUGGGUUUCAAUUGUUUUUG 5'

 -10.80 2 RIC-seq
chrX:139866170:139866196:[+] chrX:103046197:103046221:[+] nonBSJ supported 3UTR

circRNA 5':UUGUCUUCCCUUAAAUCUAUAGC--UUCC 3'


            ||:| ||||| ||||:| |||


target  3': ACGG--GGGAAGC-AGAUGUGUCUAAGA 5'

 -13.90 21 RIC-seq
chrX:139865660:139865674:[+] chrX:103045462:103045474:[+] nonBSJ supported CDS

circRNA 5':CCAGCUAAUCCAUGU 3'


            |||| ||| ||||


target  3':CGUCG-UUA-GUACU 5'

 -9.10 14 RIC-seq
chrX:139865660:139865682:[+] chrX:103042765:103042788:[+] nonBSJ supported CDS

circRNA 5':CCAGCUAAUCCAUGUCUU--CCAGA 3'


            |||| || |: ||||


target  3':UGUCGUCUC-GUCCGUUUGUGGUCC 5'

 -10.90 30 RIC-seq
chrX:139865661:139865682:[+] chrX:103042765:103042788:[+] nonBSJ supported CDS

circRNA 5': CAGCUAAUCCAUGUCUU--CCAGA 3'


            |||| || |: ||||


target  3':UGUCGUCUC-GUCCGUUUGUGGUCC 5'

 -10.50 2 RIC-seq
chrX:139866226:139866237:[+] chrX:103040521:103040535:[+] nonBSJ supported CDS

circRNA 5': GUCUU-C-CAGCAA 3'


            ||||| | |||||


target  3':GUAGAACGUGUCGUG 5'

 -11.00 1 RIC-seq
chrX:139866230:139866260:[+] chrX:103040510:103040541:[+] nonBSJ supported CDS

circRNA 5':UCCAGCAAGUC---CAC-GUCUUCCAACAAAGCCA 3'


            |||| :|| ||| |: :|| ||| |||||


target  3':UGGUCUG-UAGAACGUGUCGUGAGAUUG-UUCGG 5'

 -20.60 4 RIC-seq
chrX:139866231:139866260:[+] chrX:103040510:103040541:[+] nonBSJ supported CDS

circRNA 5': CCAGCAAGUC---CAC-GUCUUCCAACAAAGCCA 3'


            |||| :|| ||| |: :|| ||| |||||


target  3':UGGUCUG-UAGAACGUGUCGUGAGAUUG-UUCGG 5'

 -20.50 1 RIC-seq
chrX:139866266:139866289:[+] chrX:103040523:103040541:[+] nonBSJ supported CDS

circRNA 5':UCCAGACUAUCCAUGUCUU-C-CAGA 3'


            |||||| :|||| | |||


target  3':UGGUCUG-------UAGAACGUGUCG 5'

 -14.00 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:103040510:103040541:[+] target 2002058 chrX:103040510-103040511 G>A Hereditary_spastic_paraplegia_2 ClinVar
chrX:103040510:103040541:[+] target 1028820 chrX:103040527-103040528 T>A Pelizaeus-Merzbacher_disease ClinVar
chrX:103040510:103040541:[+] target 989198 chrX:103040531-103040532 A>AGATGTCTG Hereditary_spastic_paraplegia_2 ClinVar
chrX:103040510:103040541:[+] target 981179 chrX:103040531-103040532 A>T Spasticity ClinVar
chrX:103040521:103040535:[+] target 1028820 chrX:103040527-103040528 T>A Pelizaeus-Merzbacher_disease ClinVar
chrX:103040521:103040535:[+] target 989198 chrX:103040531-103040532 A>AGATGTCTG Hereditary_spastic_paraplegia_2 ClinVar
chrX:103040521:103040535:[+] target 981179 chrX:103040531-103040532 A>T Spasticity ClinVar
chrX:103040523:103040541:[+] target 1028820 chrX:103040527-103040528 T>A Pelizaeus-Merzbacher_disease ClinVar
chrX:103040523:103040541:[+] target 989198 chrX:103040531-103040532 A>AGATGTCTG Hereditary_spastic_paraplegia_2 ClinVar
chrX:103040523:103040541:[+] target 981179 chrX:103040531-103040532 A>T Spasticity ClinVar
chrX:103042765:103042788:[+] target 2443314 chrX:103042778-103042779 T>C Pelizaeus-Merzbacher_disease ClinVar
chrX:103042765:103042788:[+] target 11092 chrX:103042782-103042783 C>T Hereditary_spastic_paraplegia_2|not_provided ClinVar