Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865338:139865352:[+] chr6:99912515:99912526:[-] nonBSJ supported CDS

circRNA 5':AGGGUUUCCGAUGGC 3'


            ||||| ||||:


target  3':AUCCAA---CUACUU 5'

 -8.50 1 RIC-seq
chrX:139865338:139865399:[+] chr6:99912515:99912584:[-] nonBSJ supported CDS

circRNA 5':AGGGUUUCCGAUG---------------------GCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCA 3'


            ||||| |||| || ||||:|| |:|| ||||:|| :|||||


target  3':AUCCAA---CUACUUAUAAAAGAUAUCAUUGUAACGGUGACAUAG--CUAGUACUAGA--------CAGAGGGCAUUUGAAGA 5'

 -33.00 22 RIC-seq
chrX:139865339:139865399:[+] chr6:99912536:99912584:[-] nonBSJ supported CDS

circRNA 5':GGGUUUCCGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCA 3'


            ||| |: || || ||||:|| |:|| ||||:|| :|||||


target  3':AUCAUU-GUAACGGU-GACAUAG--CUAGUACUAGA--------CAGAGGGCAUUUGAAGA 5'

 -31.40 1 RIC-seq
chrX:139865643:139865665:[+] chr6:99912982:99913005:[-] nonBSJ supported CDS

circRNA 5':CAUCAAAUACA-GAUCUUCCAGCU 3'


            ||||| |||||| || |


target  3':AUAGUUACUUACCUAGAAAGUGGC 5'

 -11.40 21 RIC-seq
chrX:139865950:139865998:[+] chr6:99894176:99894251:[-] nonBSJ supported CDS

circRNA 5':CCAC-GUCUUC--------------------------CAGAAAAUCCAUGU--CUUCCAGAAAAUCCAU-GUCUUCCAG 3'


            ||| ||| || ||||| |||| || ||:| :|| :|||


target  3':AGUGACAGUAGUCAUCCCGAAAGUAAGUCUGCACUGAGUCUUAA--GUACUCCGACCGUUUGUAAUUUCUUAG-GGGUA 5'

 -17.00 10 RIC-seq
chrX:139865951:139865998:[+] chr6:99894204:99894251:[-] nonBSJ supported CDS

circRNA 5':CACGUCUUCCAGAAAAUCCAUGU--CUUCCAGAAAAUCCAU-GUCUUCCAG 3'


            |||| ||||| |||| || ||:| :|| :|||


target  3':CUGCACUGAGUCUUAA--GUACUCCGACCGUUUGUAAUUUCUUAG-GGGUA 5'

 -16.20 1 RIC-seq