Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866757:139866784:[+]	chr12:57606716:57606748:[+]	nonBSJ supported	3UTR	circRNA 5':AUGUCUUCCAAC-----GUCUCCAGUGUGCUGA 3' \| :\|\|\|\|\| \|:\|: \|\|\| \|\|\|\| target 3':GAGGGAAGGGUCUUAAUCGGGAGUCCUUCGACA 5'	-18.70	1	RIC-seq
chrX:139865824:139865844:[+]	chr12:57593050:57593071:[+]	nonBSJ supported	CDS	circRNA 5':GGUCUUCCAGUCAGU-CAGUGU 3' \|\| \|:\|\|\|\|\|\| \|\| \|\|\|\|: target 3':ACAAAGGGUCAGCCAGGUCAUC 5'	-20.50	4	RIC-seq
chrX:139865888:139865953:[+]	chr12:57601859:57601910:[+]	nonBSJ supported	CDS	circRNA 5':GUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCU-UCCAGCCAAUAUAUGUCUUCCUGAAGAUCCAC 3' \|\|\|\|\| \|\|\|\|\|\|\| \|\|\| :\|\| :\|\|\| \|\|\|\|\| \|\|:\|:\|\| \|\|\|\| \|:\|\|\| target 3':GAGUUA-GUGUAGA--GCC------GGGCUCAGCCAGGUC----AUGUGCA-AAGGCCGG-UGGGUC 5'	-42.00	6	RIC-seq
chrX:139866094:139866148:[+]	chr12:57585118:57585180:[+]	nonBSJ supported	CDS	circRNA 5': GCCAUGUCU-UCCAGAAAAUCCACAUCUUCCA--AUGGCC--UCC--AGGUCUUC-CAGACUA 3' \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|::\| \|:\|\|\|\| :\|\| \|\|\| \|\|\| \|\| target 3':GUGGGUCAGUCAGGUCUUUUACACG-AGGGGUAUGUGCCGGUCGGGCUUCCCCACCUGUCCGAG 5'	-40.70	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr12:57585118:57585180:[+]	target	-	chr12:57585144-57585145	C>T	LAML-KR	ICGC
chrX:139865888:139865953:[+]	circRNA	-	chrX:139865903-139865904	C>T	LINC-JP	ICGC