Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865802:139865828:[+] chr5:65118804:65118832:[+] nonBSJ supported 3UTR

circRNA 5':GUGU----CUUCCAGAAAGAAAUCCAGGUCU 3'


            ||: ||:|| || ||||||:|


target  3':AACGUUUUGAGGGAAG-UCAA-AGGUCCGGU 5'

 -19.70 1 RIC-seq
chrX:139865802:139865846:[+] chr5:65118785:65118832:[+] nonBSJ supported 3UTR

circRNA 5':GUGU----CUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCA-GUGUCU 3'


            ||: ||:|| || ||||||:| || :||||


target  3':AACGUUUUGAGGGAAG-UCAA-AGGUCCGGUCAUUGUGUACCACUACAGC 5'

 -25.00 12 RIC-seq
chrX:139865863:139865900:[+] chr5:65118794:65118825:[+] nonBSJ supported 3UTR

circRNA 5':UCUUCCACCAAA-UCCAGGUCUUCCAGUCAAUCCACAUC 3'


            ||:|| || |||||| ||||| |||||


target  3':UGAGGGAAGUCAAAGGUCC----GGUCAUU---GUGUAC 5'

 -24.20 10 RIC-seq