Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866093:139866155:[+] chr13:52549182:52549226:[-] nonBSJ supported CDS

circRNA 5':AGCCAUGUCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCUUCCAGACUAUC--CAUGU 3'


            ||||: | |||| ||| |||||:| |||||||:|:| |||:


target  3':CCGGUGGACUCU-UCUUC----------------CCG--GGUCCGGUAGGUCUGGUGGAAGUAU 5'

 -41.90 10 RIC-seq
chrX:139866125:139866155:[+] chr13:52549180:52549226:[-] nonBSJ supported CDS

circRNA 5':AUGGCC---------------UCCAGGUCUUCCAGACUAUC--CAUGU 3'


            ||||| :|||||:| |||||||:|:| |||:


target  3':CACCGGUGGACUCUUCUUCCCGGGUCCGGUAGGUCUGGUGGAAGUAU 5'

 -39.70 1 RIC-seq
chrX:139866126:139866155:[+] chr13:52549198:52549226:[-] nonBSJ supported CDS

circRNA 5':UGGCCUCCAGGUCUUCCAGACUAUC--CAUGU 3'


            ||| |||||:| |||||||:|:| |||:


target  3':CCCG--GGUCCGGUAGGUCUGGUGGAAGUAU 5'

 -36.60 6 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:52549180:52549226:[-] target 1725074 chr13:52549188-52549189 C>CT Wilson_disease ClinVar
chr13:52549180:52549226:[-] target 3576333 chr13:52549189-52549190 TGAG>T Wilson_disease ClinVar
chr13:52549180:52549226:[-] target 2679833 chr13:52549223-52549224 CA>C Wilson_disease ClinVar
chr13:52549180:52549226:[-] target 2864901 chr13:52549225-52549226 TA>T Wilson_disease ClinVar
chr13:52549182:52549226:[-] target 1725074 chr13:52549188-52549189 C>CT Wilson_disease ClinVar
chr13:52549182:52549226:[-] target 3576333 chr13:52549189-52549190 TGAG>T Wilson_disease ClinVar
chr13:52549182:52549226:[-] target 2679833 chr13:52549223-52549224 CA>C Wilson_disease ClinVar
chr13:52549182:52549226:[-] target 2864901 chr13:52549225-52549226 TA>T Wilson_disease ClinVar
chr13:52549198:52549226:[-] target 2679833 chr13:52549223-52549224 CA>C Wilson_disease ClinVar
chr13:52549198:52549226:[-] target 2864901 chr13:52549225-52549226 TA>T Wilson_disease ClinVar