Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865888:139865916:[+] chr12:26493243:26493263:[-] nonBSJ supported CDS

circRNA 5':GUCAAUCCACA-UCUUCCGGAAAAAAUCCA 3'


            |||||||| ||||| |||


target  3':UGGUUAGGUUUAAGAAG---------AGGA 5'

 -15.10 8 RIC-seq
chrX:139865910:139865929:[+] chr12:26493245:26493263:[-] nonBSJ supported CDS

circRNA 5':AAAUCCAGG-UCUUCCAGCCA 3'


            ||||||:: ||||| ||


target  3':GUUAGGUUUAAGAAGA--GGA 5'

 -15.30 1 RIC-seq
chrX:139866276:139866320:[+] chr12:26636751:26636791:[-] nonBSJ supported CDS

circRNA 5': CCA----UGUCUUCCAGAAAAUCCUU-GUCUUCCCUCAAAUCCAUAG-CUU 3'


            ||| ||: |||||||| |||| ||:|| ||


target  3':AGGUGUUUACGUCAGGUCUUUGACUUCCCAGA-----------GUGUCUGAU 5'

 -20.10 1 RIC-seq
chrX:139866295:139866336:[+] chr12:26636743:26636782:[-] nonBSJ supported CDS

circRNA 5':CUUGU-CUUCCCUCAAAUCCAUAGCU-UCC-GAAAAAUCCAGGUC 3'


            |||| ||||| ||||| || ||| |||| ||||


target  3':CAACAUGAAGGU-GUUUA-----CGUCAGGUCUUUGACUUCCCAGA 5'

 -22.80 1 RIC-seq
chrX:139866295:139866337:[+] chr12:26636743:26636783:[-] nonBSJ supported CDS

circRNA 5':CUUGU-CUUCCCUCAAAUCCAUAGCU-UCC-GAAAAAUCCAGGUCU 3'


            |||| ||||| ||||| || ||| |||| |||||


target  3':CAACAUGAAGGU-GUUUA-----CGUCAGGUCUUUGACUUCCCAGAG 5'

 -24.60 33 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865888:139865916:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139866276:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866295:139866336:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866295:139866337:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC