Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865662:139865698:[+] chr7:26231815:26231836:[-] nonBSJ supported 3UTR

circRNA 5':AGCUAAUCCAUGUCUUCCAGAAAAAUCU-GUGUCUUCC 3'


            || ||| ||: ||| ||||||||


target  3':ACG--UAG--ACG------------AGACCACAGAAGA 5'

 -14.30 1 RIC-seq
chrX:139865673:139865698:[+] chr7:26231812:26231836:[-] nonBSJ supported 3UTR

circRNA 5':GUCUUCCAGAAAAAUCU-GUGUCUUCC 3'


            ||| || ||| ||||||||


target  3':GAGAC-GUAGACG-AGACCACAGAAGA 5'

 -15.30 8 RIC-seq
chrX:139865673:139865698:[+] chr7:26231813:26231836:[-] nonBSJ supported 3UTR

circRNA 5':GUCUUCCAGAAAAAUCU-GUGUCUUCC 3'


            ||| || ||| ||||||||


target  3': AGAC-GUAGACG-AGACCACAGAAGA 5'

 -14.70 1 RIC-seq
chrX:139866127:139866162:[+] chr7:26235465:26235499:[-] nonBSJ supported CDS

circRNA 5':GGCCUCCAGGUCUUCCAGACUAUCCAUGUCUUCCAG 3'


            |||||||||||:||| ||:|||| |||


target  3': UGGAGGUCCAGGAGGAGGUAUGGGUAAUAUCGGUA 5'

 -41.10 2 KARR-seq
chrX:139865861:139865935:[+] chr7:26233207:26233267:[-] nonBSJ supported CDS

circRNA 5':CGUCUU--CCACCAAAUCCA-GGUCUUCCAGUCAAUCCA-CAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCAAUAUAU 3'


            ||| ||||| ||| :|:| :||| :| ||| |||||||||:|||| ||| :|||


target  3':ACAGUAUUGGUGG---AGGCAUCGG-GGGUGGGACCAACGGUA------------UAGGUCCAGGAGGU-GGUGGUAU 5'

 -52.90 1 KARR-seq
chrX:139865492:139865512:[+] chr7:26233428:26233449:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAAGA-AGCUCCAAGU 3'


            ||:|| ||:| |||| ||||


target  3':AAGGAGAUUUUAUCGAAGUUCC 5'

 -14.90 2 KARR-seq
chrX:139866132:139866143:[+] chr7:26236021:26236031:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCA 3'


            |||:||:|||


target  3': GUCUAGGAGGA 5'

 -15.60 3 KARR-seq
chrX:139865492:139865538:[+] chr7:26236967:26237019:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAAGAAGCUCCAA--GUCUUCCAGUAA-------AUCAAGUCUUCCAGCA 3'


            |||:||| || ||||| |||: ||||| |:| ||||


target  3':GAGAGGGUAGUUAACUUACUCCAGAACGUCGGUACCGUCGUAGUU--GGA-GUCGG 5'

 -26.10 2 KARR-seq
chrX:139866595:139866647:[+] chr7:26233209:26233279:[-] nonBSJ supported CDS

circRNA 5': CAAAUCCAUGUCU-----UCCUAUAUC----------UCCAGGUCUUCCAGCAUC---UCCAGGGCUUCCA 3'


            || |||: ||: :||:|: ||||||||:|||| ||:| ||| |||||


target  3':AGUAUUGGUGGAGGCAUCGGGGGUGGGACCAACGGUAUAGGUCCAGGAGGUGGUGGUAUAGGAGGAGAAGG 5'

 -52.30 1 KARR-seq
chrX:139866597:139866647:[+] chr7:26233232:26233279:[-] nonBSJ supported CDS

circRNA 5':AAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUC---UCCAGGGCUUCCA 3'


            |:|| || |:||| ||||||||:|||| ||:| ||| |||||


target  3': UGGG-ACCAAC-GGUAU--AGGUCCAGGAGGUGGUGGUAUAGGAGGAGAAGG 5'

 -46.60 1 KARR-seq
chrX:139865487:139865517:[+] chr7:26237017:26237051:[-] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAAGAAGCU------CCAAGUCUUCC 3'


            ||||| ||:||| ||||:||:||


target  3':CGGUACCUAC--UUUUUCAAUGUUUUGGUUUAGGAGA 5'

 -18.30 2 KARR-seq
chrX:139866606:139866645:[+] chr7:26237278:26237311:[-] nonBSJ supported CDS

circRNA 5':CUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCCAGGGCUUC 3'


            ||||| || ||||| ||::||||


target  3':CAAGGAGUUUGAA----AGAAGACACCAAA-GUUUCGAA 5'

 -14.90 2 KARR-seq
chrX:139866127:139866154:[+] chr7:26235465:26235491:[-] nonBSJ supported CDS

circRNA 5':GGCCUCCAGGUCUUCCAGACUAUCCAUG 3'


            |||||||||||:||| ||:||||


target  3': UGGAGGUCCAGGAGGAGGUAUGGGUAA 5'

 -38.20 1 KARR-seq
chrX:139865858:139865926:[+] chr7:26233214:26233286:[-] nonBSJ supported CDS

circRNA 5': CUACGUCU------UCCACCAA---------AUCCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAG 3'


            |:|| ||: :||||| |||||||||:|||| :|| ||| |||:||| ||| ||:||||


target  3':UGGUGGAGGCAUCGGGGGUGGGACCAACGGUAUAGGUCCAGGAGGU-GGU--GGUAUAGGAGGAGA-----AGG---AGGAGGU 5'

 -61.60 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:26236021:26236031:[-] target - chr7:26236028-26236029 T>C LINC-JP ICGC
chr7:26236967:26237019:[-] target - chr7:26237013-26237014 C>G RECA-EU ICGC
chrX:139865858:139865926:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865861:139865935:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC