Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866636:139866696:[+]	chr7:26252590:26252645:[+]	nonBSJ supported	3UTR	circRNA 5':CCAGGGCUUCCAGCAUC-UGCUCGUCUUCCAACAUCUCCACGUCUUCC-AGCAUCUCUGUGUC 3' \|\|\|\|\| \|\|\|\|\|:\|\|\| \|\|\|\| \|\| \|\|: \|:\| :\|\|\| target 3':UGUCCCUAAGGUUGUAAAACGAUUCCUUACC------GG-GCGAUCCCUUUGAAAAUUUACAA 5'	-27.50	1	RIC-seq
chrX:139866636:139866704:[+]	chr7:26252582:26252645:[+]	nonBSJ supported	3UTR	circRNA 5':CCAGGGCUUCCAGCAUC-UGCUCGUCUUCCAACAUCUCCACGUCUUCC-AGCAUCUCUGUG-UCUUCCAGCA 3' \|\|\|\|\| \|\|\|\|\|:\|\|\| \|\|\|\| \|\| \|\|: \|:\| :\|\| \|\| \|:\| target 3':UGUCCCUAAGGUUGUAAAACGAUUCCUUACC------GG-GCGAUCCCUUUGAAAAUUUACAAGUAAAUUG 5'	-28.30	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr7:26252582:26252645:[+]	target	-	chr7:26252608-26252609	T>C	PACA-CA	ICGC
chr7:26252590:26252645:[+]	target	-	chr7:26252608-26252609	T>C	PACA-CA	ICGC