Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865869:139865930:[+] chr7:35944202:35944265:[+] nonBSJ supported 3UTR

circRNA 5':ACCA-AAUCCAGGUCUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCA------GGUCUU-CCAGCCAA 3'


            || ||| |::|||||||| ||| |||| |||| ::|| ||| |||


target  3': GGAGUUACUUUUAGAAGGUCUC--AGGAAAAUAAAACCUUA--UAGGACAUUUGUUAGUUUGGU-GGUC 5'

 -29.80 1 RIC-seq
chrX:139865897:139865923:[+] chr7:35944239:35944268:[+] nonBSJ supported 3UTR

circRNA 5':CAUCUUCCG-GAAAAAA-UCCAG-GUCUUC 3'


            |||:|| ||||| ||||| |||:|


target  3':AUAGGAGUUACUUUUAGAAGGUCUCAGGAA 5'

 -20.70 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865869:139865930:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865897:139865923:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC