Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865510:139865539:[+] chr1:93299120:93299149:[+] nonBSJ supported 5UTR

circRNA 5':AGUCUUCCAGUAA-AUCAAGUC-UUCC-AGCAA 3'


            ||||| ||| |:||||: |||| ||||


target  3':AUAGAA---CAUAGUGGUUCGCAAAGGCUCGUA 5'

 -20.00 2 RIC-seq
chrX:139866603:139866640:[+] chr1:93299110:93299148:[+] nonBSJ supported 5UTR

circRNA 5':UGUCUUCCUAUAUCUCCAGGUC-UUCC-AGCAUCUC---CAGG 3'


            ||||| |||| |||:|: |||| ||||| |||


target  3': UAGAAC---AUAGUGGUUCGCAAAGGCUCGUAUUAUUAGUCA 5'

 -23.50 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:93299110:93299148:[+] target 1763241 chr1:93299110-93299111 AC>A Diamond-Blackfan_anemia ClinVar
chr1:93299110:93299148:[+] target 2633707 chr1:93299114-93299115 ATTATTATGCTCGGAAACGC>A RPL5-related_disorder ClinVar
chr1:93299110:93299148:[+] target 1766492 chr1:93299119-93299120 T>TA Diamond-Blackfan_anemia ClinVar
chr1:93299110:93299148:[+] target 1690417 chr1:93299136-93299137 G>GGT See_cases ClinVar
chr1:93299110:93299148:[+] target 2766031 chr1:93299138-93299139 TGATACAA>T Diamond-Blackfan_anemia ClinVar
chr1:93299120:93299149:[+] target 1690417 chr1:93299136-93299137 G>GGT See_cases ClinVar
chr1:93299120:93299149:[+] target 2766031 chr1:93299138-93299139 TGATACAA>T Diamond-Blackfan_anemia ClinVar
chr1:93299120:93299149:[+] target 1527850 chr1:93299148-93299149 TAAAAATAAATACAACACACCCAA>T Diamond-Blackfan_anemia_6 ClinVar