Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865724:139865736:[+] chr1:93301789:93301803:[+] nonBSJ supported CDS

circRNA 5': CUAGUU-CUUCCAG 3'


            |:|||: |:||||


target  3':UGGUCAGUGGAGGUG 5'

 -13.70 1 RIC-seq
chrX:139866635:139866656:[+] chr1:93303058:93303086:[+] nonBSJ supported CDS

circRNA 5':UCCAGG----GCUUCCA----GCAUCUGCU 3'


            ||| |||||| :| |||||


target  3': GGUACUACACGAAGGCUACAUGAAGACGU 5'

 -17.30 2 RIC-seq
chrX:139866635:139866656:[+] chr1:93303058:93303087:[+] nonBSJ supported CDS

circRNA 5':UCCAGG----GCUUCCA----GCAUCUGCU 3'


            ||| |||||| :| |||||


target  3':GGGUACUACACGAAGGCUACAUGAAGACGU 5'

 -18.70 9 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:93303058:93303086:[+] target 1752117 chr1:93303064-93303065 A>AGTACATCGGAAGCACATCATGGGCCAGAATGTTGCAGATTT Diamond-Blackfan_anemia ClinVar
chr1:93303058:93303087:[+] target 1752117 chr1:93303064-93303065 A>AGTACATCGGAAGCACATCATGGGCCAGAATGTTGCAGATTT Diamond-Blackfan_anemia ClinVar
chr1:93301789:93301803:[+] target - chr1:93301803-93301804 T>C LICA-CN ICGC