Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865940:139865959:[+] chr4:39460752:39460784:[+] nonBSJ supported CDS

circRNA 5':UCCUGAAGAUCCA------------CGUCUUC 3'


            ||:| :||| |:||::|


target  3':UGGGCCCCGGGGUCCCACGCCCGACGUAGGGGC 5'

 -12.30 1 RIC-seq
chrX:139865940:139865963:[+] chr4:39460748:39460784:[+] nonBSJ supported CDS

circRNA 5':UCCUGAAGAUCCA------------CGUCUUC-CAGA 3'


            ||:| :||| |:||::| |||


target  3':UGGGCCCCGGGGUCCCACGCCCGACGUAGGGGCGUCG 5'

 -17.00 14 RIC-seq
chrX:139865965:139866010:[+] chr4:39460747:39460785:[+] nonBSJ supported CDS

circRNA 5':AAUCCAU-GUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCAGU 3'


            |:|| |:| |||| ||: |:| ||:| |||:


target  3':GUGGGCCCCGG--GGUCCC------ACGCCCGA-CGUAGGGGCGUCGC 5'

 -18.50 2 RIC-seq