Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865990:139866018:[+] chr8:27468019:27468048:[-] nonBSJ supported CDS

circRNA 5': GUCUUCCAGUAACCU-CCCAGUCUUCCAGA 3'


            |||::|||| |||| |||| |||:||||


target  3':CCAGGGGGUCC-UGGACGGGUGAGAGGGUCC 5'

 -41.80 17 RIC-seq
chrX:139865990:139866055:[+] chr8:27468019:27468078:[-] nonBSJ supported CDS

circRNA 5': GUCUUCCAGUAACCU-CCCAGUCUUCCAGAAAAUCCACGUCUUCCCAACAAUCCAAGUCUUCCGGAU 3'


            |||::|||| |||| |||| |||:|||| || |: :||| |||| ||: |:||


target  3':CCAGGGGGUCC-UGGACGGGUGAGAGGGUCCAGUC-GU-CGUCGGGG-UGUUUG--UCGUC--GUCUC 5'

 -52.40 2 RIC-seq
chrX:139865990:139866066:[+] chr8:27468019:27468080:[-] nonBSJ supported CDS

circRNA 5': GUCUUCCAGUAACCU-CCCAGUCUUCCAGAAAAUCCACGUCUUCCCAACAAUCCAAGUCUUCCGGAUAAUUU--GGGUCU 3'


            |||::|||| |||| |||| |||:|||| ||| ||:|:: |::|:| |:|||


target  3':CCAGGGGGUCC-UGGACGGGUGAGAGGGUC---------CAGUCGUCG--------UCGGGGUGUUUGUCGUCGUCUCAG 5'

 -53.40 14 RIC-seq