Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865388:139865408:[+] chr8:29207402:29207418:[-] nonBSJ supported CDS

circRNA 5':CCAGCGACUU-CAAGUCUUCCA 3'


            ||||| |:| || |: ||


target  3':CGUCGC-GGACGU---GGUGG 5'

 -12.30 1 RIC-seq
chrX:139865390:139865444:[+] chr8:29207384:29207417:[-] nonBSJ supported CDS

circRNA 5':AGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGAGCUUCC 3'


            ||| ||: || ||: ||| |||| :|: |


target  3':ACGC-GAGCCGCAACG-------------CCGC---GUCGC---GGACGUGGUG 5'

 -14.40 1 RIC-seq
chrX:139865390:139865445:[+] chr8:29207384:29207418:[-] nonBSJ supported CDS

circRNA 5':AGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGAGCUUCCA 3'


            ||| ||: || ||: ||| |||| :|: ||


target  3':ACGC-GAGCCGCAACG-------------CCGC---GUCGC---GGACGUGGUGG 5'

 -18.60 11 RIC-seq