Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865641:139865651:[+] chr12:98942133:98942142:[+] nonBSJ supported 3UTR

circRNA 5':UCCAUCAAAUA 3'


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target  3':UGGUAGUUUG 5'

 -11.00 2 RIC-seq
chrX:139865732:139865772:[+] chr12:98912038:98912078:[+] nonBSJ supported Intron

circRNA 5':UCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUC-CA 3'


            |||| |||| || |||:||: |||| |


target  3':UGGUCAUUA-AGAUAAUAUUUGUAUGUUGGUUUUUGAAGUGC 5'

 -19.30 1 RIC-seq
chrX:139865732:139865796:[+] chr12:98912009:98912078:[+] nonBSJ supported Intron

circRNA 5':UCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAU------C-CAGGUCUUCCAGUC 3'


            |||| |||| || |||:||: |||| | |||: |||:|


target  3':UGGUCAUUA-AGAUAAUAUUUGUAUGUUGGUUUUUGAAGUGCCAAAUUAUGAAAACGUGUCUCCU-GGUUAC 5'

 -21.60 1 RIC-seq