Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866644:139866687:[+] chr5:138700305:138700334:[+] nonBSJ supported CDS

circRNA 5':UCCAGCAUC-UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAU 3'


            ||| || ||||| |||||| ||||||||||


target  3':UGGUA--AGUACGAGAAGAAGG------------AGAAGGUCGU 5'

 -34.20 16 RIC-seq
chrX:139866644:139866688:[+] chr5:138700303:138700334:[+] nonBSJ supported CDS

circRNA 5':UCCAGCAUC-UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUC 3'


            ||| || ||||| |||||| |||||||||||


target  3':UGGUA--AGUACGAGAAGAAGG------------AGAAGGUCGUAA 5'

 -35.40 3 RIC-seq