Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865873:139865901:[+] chr4:158257577:158257618:[+] nonBSJ supported CDS

circRNA 5':AAUCC--AGGUCUUCC--------------AGUCAAUCCACAUCU 3'


            |||| ||| ||: ||||||| ||| ||


target  3':AUAGGGCUCC-GAGUACUUCCCGAAACUCUUCAGUUA-GUGGAG 5'

 -16.90 24 RIC-seq
chrX:139865873:139865904:[+] chr4:158257573:158257618:[+] nonBSJ supported CDS

circRNA 5':AAUCC--AGGUCUUCC--------------AGUCAAUCCACAUCUUCC 3'


            |||| ||| ||: ||||||| ||| |||||


target  3':AUAGGGCUCC-GAGUACUUCCCGAAACUCUUCAGUUA-GUGGAGAAGA 5'

 -22.10 21 RIC-seq
chrX:139865873:139865904:[+] chr4:158257574:158257618:[+] nonBSJ supported CDS

circRNA 5':AAUCC--AGGUCUUCC--------------AGUCAAUCCACAUCUUCC 3'


            |||| ||| ||: ||||||| ||| |||||


target  3':AUAGGGCUCC-GAGUACUUCCCGAAACUCUUCAGUUA-GUGGAGAAG 5'

 -21.90 1 RIC-seq
chrX:139865875:139865904:[+] chr4:158257573:158257615:[+] nonBSJ supported CDS

circRNA 5':UCC-AGGUCUUCC--------------AGUCAAUCCACAUCUUCC 3'


            || ||| ||: ||||||| ||| |||||


target  3':GGGCUCC-GAGUACUUCCCGAAACUCUUCAGUUA-GUGGAGAAGA 5'

 -21.20 1 RIC-seq
chrX:139865412:139865469:[+] chr4:158281886:158281928:[+] nonBSJ supported Intron

circRNA 5':AUCUCAAGGUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAU 3'


            ||| ||| ||| :|| || :||: || |||||| ||:||||


target  3':AAGAUAUA-AGAU-GUC-GUU---ACAUGAGUGU-----AGGUGUU----GUUUGUUU 5'

 -18.80 20 RIC-seq
chrX:139865420:139865469:[+] chr4:158281886:158281921:[+] nonBSJ supported Intron

circRNA 5':GUCUUCCAGAUAAUCCUGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAU 3'


            ||| ||| :|| || :||: || |||||| ||:||||


target  3':AAGAU-GUC-GUU---ACAUGAGUGU-----AGGUGUU----GUUUGUUU 5'

 -17.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865873:139865904:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865875:139865904:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC