Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866288:139866309:[+] chr5:167984123:167984146:[-] nonBSJ supported 3UTR

circRNA 5': GAAAAUCCUUGUCUUCCC--UCAA 3'


            || ||| ||| || |||


target  3':ACUAGUAGAAACUAACGGUAAAGU 5'

 -7.00 1 RIC-seq
chrX:139866293:139866343:[+] chr5:167984094:167984148:[-] nonBSJ supported 3UTR

circRNA 5':UCCUUGUCUUCCCUCAAAUC-CAUAGCUUCCGAAAAAUCCAG----GUC-UUCCAGG 3'


            ||||: || ||||| ||||: || ||| |:| || |||


target  3':CGGAAUUGUAAAGAUUUUAGUGUAUUUUUA-CUAG-UAGAAACUAACGGUAAAGUCA 5'

 -14.00 20 RIC-seq
chrX:139866294:139866343:[+] chr5:167984094:167984148:[-] nonBSJ supported 3UTR

circRNA 5': CCUUGUCUUCCCUCAAAUC-CAUAGCUUCCGAAAAAUCCAG----GUC-UUCCAGG 3'


            ||||: || ||||| ||||: || ||| |:| || |||


target  3':CGGAAUUGUAAAGAUUUUAGUGUAUUUUUA-CUAG-UAGAAACUAACGGUAAAGUCA 5'

 -13.90 21 RIC-seq
chrX:139866295:139866343:[+] chr5:167984091:167984148:[-] nonBSJ supported 3UTR

circRNA 5':CUUGUCUUCC-----CUCAAAUC-CAUAGCUUCCGAAAAAUCCAG----GUC-UUCCAGG 3'


            |||:||| || ||||| ||||: || ||| |:| || |||


target  3':UAACGGAAUUGUAAAGAUUUUAGUGUAUUUUUA-CUAG-UAGAAACUAACGGUAAAGUCA 5'

 -13.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866293:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866294:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866295:139866343:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC