Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866581:139866605:[+] chr5:167977566:167977596:[-] nonBSJ supported 3UTR

circRNA 5':GCUACGUCUUCCA--ACA---AAUC-CAUGU 3'


            |||| | ||| ||| |||| |||:|


target  3':AGAUGGACC-GGUAAUGUCCGUUAGUGUAUAA 5'

 -11.90 2 RIC-seq
chrX:139866648:139866703:[+] chr5:167980174:167980229:[-] nonBSJ supported 3UTR

circRNA 5': GCAUCUGCUCGUC---UUCCAACAU---CUCCACGUCUUCCAGCAUCUCUGUGUCUUCCAGC 3'


            |||| |||| || ::|||| ||||| |||: |||| :|| |||||


target  3':CCGUAU-CGAGAAGUCUGGGGUUCUACUUGAGGUCU----GGUUUCU-AGACCUAG-AGGUCU 5'

 -35.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866581:139866605:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC