Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865762:139865810:[+] chr10:112045341:112045391:[+] nonBSJ supported 3UTR

circRNA 5':AGUGUCUUCCAGAAAGAAAUC---CA-GGUCUUCCAG-UCAAUCAGUGUCUUCC 3'


            | :||: ||||||| || |:| ||| |||| || | ||||


target  3':CCUUAGGUUGUCUUUCAACUCGACGUACUACUAGGGAAAGUUU-UC-C-GAAGU 5'

 -20.40 28 RIC-seq
chrX:139866332:139866346:[+] chr10:112038981:112038995:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAA 3'


            ||||:| ||||


target  3':ACCAGGAUCACCUUA 5'

 -12.20 1 RIC-seq
chrX:139866332:139866349:[+] chr10:112038979:112038995:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCC 3'


            ||||:| || ||||


target  3':ACCAGGAUCACC-UUAGU 5'

 -12.40 33 RIC-seq
chrX:139866614:139866661:[+] chr10:112044584:112044628:[+] nonBSJ supported CDS

circRNA 5':AUCUCCA-GGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUC--GUCU 3'


            |||||| || ||| |||| ||:||||::|| :|||


target  3':AAGAGGUACCCUCUU------GAGACA-CGAAAGUUGUAGGUGAAGUUAGAG 5'

 -31.80 1 RIC-seq
chrX:139866614:139866662:[+] chr10:112044585:112044628:[+] nonBSJ supported CDS

circRNA 5':AUCUCCA-GGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUC--GUCUU 3'


            |||||| || ||| |||| ||:||||::|| :|||


target  3':AAGAGGUACCCUCUU------GAGACA-CGAAAGUUGUAGGUGAAGUUAGA 5'

 -31.50 1 RIC-seq
chrX:139866614:139866674:[+] chr10:112044582:112044628:[+] nonBSJ supported CDS

circRNA 5':AUCUCCA-GGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGC-UCGUCUUCCAACAUCUCCA 3'


            |||||| || ||| |||| ||:||||::| ||: ||||||


target  3':AAGAGGUACCCUCUU------GAGACA-CGAAAGUUGUAGGUGAAGU---------UAGAGGA 5'

 -36.70 53 RIC-seq