Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865461:139865487:[+] chr14:73586583:73586611:[+] nonBSJ supported 3UTR

circRNA 5':CCAGACAAUC-C-AUGUCUUCC-GGACAAU 3'


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target  3':UGUCUAG-AGUGUUACAGAAGUUUCUGUUU 5'

 -21.00 1 RIC-seq
chrX:139865966:139865995:[+] chr14:73554815:73554844:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCAGAAAAUCCA-UGUCUUC 3'


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target  3':AAGGUA-AGUAGGUCGACACGGAAACAGAAA 5'

 -22.20 1 RIC-seq
chrX:139866312:139866322:[+] chr14:73574566:73574577:[+] nonBSJ supported CDS

circRNA 5':CCAUAG-CUUCC 3'


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target  3':AGUAUCAGAAGA 5'

 -10.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866312:139866322:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC