Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865535:139865599:[+] chr9:131458024:131458089:[+] nonBSJ supported 3UTR

circRNA 5':AGCAAAU--C-CAGUCUUCC---AGCAAUUACUGGUCUUCCACCAAAUCCAGAU-CUUCCAGGAAAAUCCAC 3'


            |||| | ||| ||| || ||||| |:||| :|| ||| |||:|| |||


target  3': UGUUACAUGAGUCUCUCAUAACUCGAUA--GACCAUAGGGUUUACUACACUUAUGAAAGUCUUU---GGUU 5'

 -23.00 3 RIC-seq
chrX:139865542:139865599:[+] chr9:131458024:131458080:[+] nonBSJ supported 3UTR

circRNA 5':CCAGUCUUCC---AGCAAUUACUGGUCUUCCACCAAAUCCAGAU-CUUCCAGGAAAAUCCAC 3'


            ||| ||| || ||||| |:||| :|| ||| |||:|| |||


target  3':AGUCUCUCAUAACUCGAUA--GACCAUAGGGUUUACUACACUUAUGAAAGUCUUU---GGUU 5'

 -23.00 1 RIC-seq
chrX:139865814:139865852:[+] chr9:131458159:131458192:[+] nonBSJ supported 3UTR

circRNA 5':AAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGA 3'


            ||| |||||||| || | ||| |||


target  3':AUCUCGUGGUCCAGA----CAACCUACCACCACC-GUCC 5'

 -18.50 24 RIC-seq